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View Structure Prediction Details

Protein: CE19819
Organism: Caenorhabditis elegans
Length: 712 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19819.

Description E-value Query
Range
Subject
Range
gi|157766618 - gi|157766618|ref|XP_001675652.1| Hypothetical protein CBG05609 [Caenorhabditis briggsae AF16]
gi|187034852, gi... - gi|39585347|emb|CAE61669.1| Hypothetical protein CBG05609 [Caenorhabditis briggsae], gi|187034852|em...
746.0 [0..9] [712..1]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNVPSTSRE NSRNPSESSS SIQDLLINVE ANDLSSVVNE DVSITMSAPP SPATPRKIDF  60
   61 SAEIETPKST GIRRRLTLKD SIGSDLENDP ESTPAIRKPS RISYDERLTV ICDSQTSSPL 120
  121 QTPSPSQERD SAPFADVFQP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [141-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGFFSFFWEE LTRGYSLHND HARFSEKRRK VYAFLRIPLE LEQFLTYGLL QCIDAFFYLF  60
   61 TFLPLRFLMS IFGALLRIKR WTSAETCDFL KVVIIVAASM LIREIDSSFL YHQVRSQGVI 120
  121 KLYIFYNMLE VADRLFSSLG QDIFDALLWT ANSEKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [297-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSVGYFIRTC GHLIVAILYA TLHSFLVILQ ATTLNVAFNS HNQTVLAIMM SNNFVELKGS  60
   61 VFKKFAKANL FQMACSDVRE RFHIFALLFV VMIRNMTAVN WNIDSFTEMI PDIIMVVGCE 120
  121 YFVDWLKHAF ITKFNEINAE VYKDFTITIA FDVIRSRDQS AFSDYSDQVS RRMGFIPIPL 180
  181 SIMIIRVLSQ TFTLDNWGSC IIFGIGWLLV FAVKICNGVV MLGQACHHVK RFRDIQARAE 240
  241 FELF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [541-712]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKRMVEKKSK SAPNSPRMSL IDFTDVLHQP AAGKGFTVSD MLSQWEELQP SLLSSEIRRS  60
   61 TDRETAVSHL TARSDERTPR RAVSMAHIPR RDRSEPPPAP SMDQDPQLDT EDPVVTENNT 120
  121 NSNSEQASPV KKKTTAAPVT SSASTNTNAT SSDELADVTA YKMPEQGVQR IE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle