YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19672
Organism:	Caenorhabditis elegans
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19672.

Description	E-value	Query Range	Subject Range
gi\|157762016 - gi\|157762016\|ref\|XP_001673350.1\| Hypothetical protein CBG08678 [Caenorhabditis briggsae AF16] gi\|39583985, gi\|... - gi\|39583985\|emb\|CAE64075.1\| Hypothetical protein CBG08678 [Caenorhabditis briggsae], gi\|187032448\|em...	474.0	[0..1]	[269..64]
gi\|34785219, gi\|... - gi\|34785219\|gb\|AAH56967.1\| RIKEN cDNA 2700097O09 gene [Mus musculus], gi\|148704790\|gb\|EDL36737.1\| RI...	342.0	[0..47]	[259..81]
gi\|109479395, gi... - gi\|27664000\|ref\|XP_234159.1\| PREDICTED: similar to C04F5.8 [Rattus norvegicus], gi\|157819985\|ref\|NP_...	335.0	[0..47]	[259..81]
gi\|115495527, gi... - gi\|115495527\|ref\|NP_001069741.1\| hypothetical protein LOC613444 [Bos taurus], gi\|113911850\|gb\|AAI226...	313.0	[0..47]	[259..81]
gi\|73962739 - gi\|73962739\|ref\|XP_850590.1\| PREDICTED: similar to C04F5.8 isoform 1 [Canis familiaris]	305.0	[0..47]	[259..81]
gi\|50748420 - gi\|50748420\|ref\|XP_421237.1\| PREDICTED: similar to RIKEN cDNA 2700097O09 [Gallus gallus]	246.0	[0..48]	[259..82]
gi\|63102356, gi\|... - gi\|66472662\|ref\|NP_001018381.1\| hypothetical protein LOC553566 [Danio rerio], gi\|63102356\|gb\|AAH9510...	243.0	[0..47]	[259..81]
gi\|5852148, gi\|6... - gi\|68126107\|emb\|CAJ07160.1\| hypothetical protein, conserved [Leishmania major], emb\|CAB55510.1\| hypo... gi\|157868198 - gi\|157868198\|ref\|XP_001682652.1\| hypothetical protein [Leishmania major strain Friedlin]	224.0	[0..50]	[237..176]
gi\|47214800 - gi\|47214800\|emb\|CAF89627.1\| unnamed protein product [Tetraodon nigroviridis]	223.0	[0..10]	[259..41]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDRGARKLD RIAAYLRDKA VDVPSKAPSK LRWPTEGFDS DCTELNTCEV DSFLYEDDDV  60
   61 EELVERDELS RTYCPVCSSR DTVPLNFISH SLSRLQVKFL FDLLMPPTCQ HVLDIGSRLG 120
  121 AIVYGASIFT NGNVSTIGVE MDSDYAALAL RTIRQFGLKN IEILRDDIRH LAHVFKDNQF 180
  181 IVMNNVFSFF LSKTEQEECW EFLHTHMRPG TVLAHHPPIE KITEHLDLSF DIEDWLEFVN 240
  241 TTTECLEYGA NDSEIYEEMA SICKYIVRDS RAHGDSVPE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.27
Match:	1o54A
Description:	Crystal structure of SAM-dependent O-methyltransferase (TM0748) from Thermotoga maritima at 1.65 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits