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View Structure Prediction Details

Protein: ooc-3
Organism: Caenorhabditis elegans
Length: 448 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ooc-3.

Description E-value Query
Range
Subject
Range
ooc-3 - status:Confirmed UniProt:Q8I132 protein_id:CAD59139.1
882.0 [0..1] [448..1]

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Predicted Domain #1
Region A:
Residues: [1-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIWVTLLL LVPQLFATQD IDEEFTHENV WKDPNDPTSG ESPPASKRLL SVRNQVQKFQ  60
   61 PDQSLRLILR QLLHETKIDY HLEGSIKKDV QIKISRHSMS VLSKYLKNDE ADLAEEREAV 120
  121 RSALSNIFSV KPPAPDRTWQ DTFVTLQPFI FTLNIFILPA AAFVVLRSIV RPRNFWILVL 180
  181 STALLVSMYS GYSKKYQEAE SRRFAQFQEH AH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.431798
Match: PF00616.10
Description: No description for PF00616.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [213-448]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSCATEGLLS RMVEILASPF QYRQKSKCLK YIESQTISIF HEISIIEVFS ETISGGFFAF  60
   61 FSGSAKHFNL FFRNLYDGAP LIAQIVMTIF LVLMLGAIRT PFFSYEPIWL NFCSSSIGKI 120
  121 AGWLDGEPPQ QPAPQLLITA KEMKRLEQAR NKKPEMISYP TSEREDVVSG SENGNEKKSD 180
  181 NEREESMKME EDSAPVESSL EDDLSLLGES SEDEDEEKVN ESPAKIDSTT LSESSF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle