YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19513
Organism:	Caenorhabditis elegans
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19513.

Description	E-value	Query Range	Subject Range
gi\|18606328 - gi\|18606328\|gb\|AAH23146.1\| Biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associ...	165.0	[0..4]	[260..37]
gi\|28277835 - gi\|28277835\|gb\|AAH45899.1\| LOC402804 protein [Danio rerio]	163.0	[0..9]	[261..51]
gi\|74003990 - gi\|74003990\|ref\|XP_535867.2\| PREDICTED: similar to Valacyclovir hydrolase precursor (VACVase) (Biphe...	163.0	[0..4]	[260..56]
gi\|50734100 - gi\|50734100\|ref\|XP_418972.1\| PREDICTED: similar to BPHL [Gallus gallus]	162.0	[0..4]	[260..31]
gi\|77748370, gi\|... - gi\|81295385\|ref\|NP_001032283.1\| biphenyl hydrolase-like (serine hydrolase) [Rattus norvegicus], gi\|7...	162.0	[0..4]	[260..37]
gi\|114605245, gi... - gi\|114605247\|ref\|XP_001161456.1\| PREDICTED: biphenyl hydrolase-like isoform 2 [Pan troglodytes], gi\|...	159.0	[0..4]	[260..20]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQSDYIESS EHIKDTQIGY CKYGHGPNYI LAICGAVGCY KKDWPLKLLS HFPPDQVTIV  60
   61 GIDPPGYGTS RPPERKQEVQ RCMKDSEYCL GLMETLKLEP FTVMGWSEGA RTTVHVAAKG 120
  121 KEKVNRMIVM AGATKVNHLG AMAFKGMRET NHWLAAGRQP YLDHYSPETL RTQWAALCDV 180
  181 VDQVHSFCGG RFPCDLVLPQ VKCPTLVMNG GLDRFCGDPN VCFIPVLKSL AKVEIHAQGG 240
  241 HDFYLKYPKW FSGKVLEFLK STEKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	2d0dA
Description:	No description for 2d0dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits