YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19506
Organism:	Caenorhabditis elegans
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19506.

Description	E-value	Query Range	Subject Range
CE19505 - C45E5.5 was incorporated into this gene - 980715 -js status:Partially_confirmed UniProt:Q9TYZ2 prote...	258.0	[0..1]	[179..215]
gi\|157757155 - gi\|157757155\|ref\|XP_001670921.1\| Hypothetical protein CBG19874 [Caenorhabditis briggsae AF16] gi\|39588310, gi\|... - gi\|39588310\|emb\|CAE72661.1\| Hypothetical protein CBG19874 [Caenorhabditis briggsae], gi\|187023686\|em...	231.0	[0..1]	[170..201]
gi\|67522058, gi\|... - gi\|67522058\|ref\|XP_659090.1\| hypothetical protein AN1486.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	183.0	[0..7]	[165..126]
gi\|71018081, gi\|... - gi\|71018081\|ref\|XP_759271.1\| hypothetical protein UM03124.1 [Ustilago maydis 521], ref\|XP_400739.1\| ...	182.0	[0..6]	[157..228]
gi\|42546032, gi\|... - gi\|46109216\|ref\|XP_381666.1\| hypothetical protein FG01490.1 [Gibberella zeae PH-1], gi\|42546032\|gb\|E...	166.0	[0..7]	[164..138]
gi\|109463823, gi... - gi\|109463823\|ref\|XP_001080083.1\| PREDICTED: similar to Ribonuclease P protein subunit p30 (RNaseP pr...	153.0	[0..6]	[109..147]
gi\|74141899, gi\|... - gi\|74141899\|dbj\|BAE41017.1\| unnamed protein product [Mus musculus], gi\|74137649\|dbj\|BAE35853.1\| unna...	153.0	[0..6]	[104..129]
gi\|109089903 - gi\|109089903\|ref\|XP_001087609.1\| PREDICTED: ribonuclease P (30kD) [Macaca mulatta]	152.0	[0..6]	[104..147]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRIRNDGVF YEIAYAESLM PATRKNTLFN GRVLIRSLKS KNIIFSSGAE TMLDLRSPVD  60
   61 VMNMSLLWGV ANNEARKMIS GFPKNLLLQA ECRGTGNGDV CSMK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1v77A
Description:	Crystal structure of the PH1877 protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [105-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSDAEKLAGN GEEEEQDGAS EEKVVVGKEE EAEKVKAPPI EVRMNHSQYQ ALLQATKNAN  60
   61 DMMKKIKASK AASSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits