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View Structure Prediction Details

Protein: CE19418
Organism: Caenorhabditis elegans
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19418.

Description E-value Query
Range
Subject
Range
CE21354 - status:Partially_confirmed UniProt:Q9N2S5 protein_id:AAF60927.1
306.0 [0..13] [275..108]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHVESSKRS LKNSLPAITE QNDTPTNAKY CPVGQFAFGI QVQELEAQQQ LGGFAFYCEN  60
   61 IGRILGFEPG IYGLISDKTV RMEFTESQGN WDVPSRCPDL SGIVGVNMSF GQNGILKSVT 120
  121 PTCGAPFDLE QGRTAMLKVG FGEGLPSLGS IESTTCDQGL AVSSSPVGTE YYLPLAFKKG 180
  181 NRVTRNISDQ EMAAIKTGVF EGID

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.0
Match: 1vmoA
Description: Vitelline membrane outer protein-I (VMO-I)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [205-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YHHDILNVIN ADPRMEGDRY MMEHFKEEIK KAFENPQNPK IVFVTGARTH TSIHQLTIYV  60
   61 GEHRIGLKKI IRYVN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [280-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKQVPNTSTG WSTDKNEVVS FKGYEDASVS AEEAAEITRE IIESFDASGP KVLDEIKRDP  60
   61 ESRTFDLGRA KNEVEGSSQT REDTKITVTT FPGDRQHLKQ LFASCGRHNL GLRMIVNKTY 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle