YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19370
Organism:	Caenorhabditis elegans
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19370.

Description	E-value	Query Range	Subject Range
CE27840 - status:Partially_confirmed UniProt:Q9TZA8 protein_id:AAC68757.2	168.0	[0..1]	[220..1]
gi\|109467069, gi... - gi\|62643982\|ref\|XP_578033.1\| PREDICTED: similar to TD and POZ domain containing 2 [Rattus norvegicus...	162.0	[0..6]	[182..188]
gi\|91077018 - gi\|91077018\|ref\|XP_966622.1\| PREDICTED: similar to CG9924-PC, isoform C [Tribolium castaneum]	160.0	[0..6]	[185..275]
gi\|115482122, gi... - gi\|37534574\|ref\|NP_921589.1\| putative speckle-type protein [Oryza sativa (japonica cultivar-group)],...	157.0	[0..2]	[165..190]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSSETIVKL NVGGSVFETW KSTLTKQDGF FKTLVETNIP VKKDTSDCYF IDRSPKYFET  60
   61 VLNYMRSGVT VLPDSEKELQ ELKKEAEFYL LEQLVDLCEP INNQIRTYRS SHELLQIIAS 120
  121 TKKPVVVINY ITHNNDIIYI PEGFRFDEFV KKNSSVVEIY FQPMDNREPL PKDLRRHRGM 180
  181 KYYPEPVWSY RIYNSTHSGC VDLTAMDDLQ KKIDSILNGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits