YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19368
Organism:	Caenorhabditis elegans
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19368.

Description	E-value	Query Range	Subject Range
gi\|76622246 - gi\|76622246\|ref\|XP_617648.2\| PREDICTED: similar to protein tyrosine phosphatase, receptor type, sigm...	276.0	[0..2]	[268..1247]
gi\|109123034 - gi\|109123034\|ref\|XP_001083499.1\| PREDICTED: similar to protein tyrosine phosphatase, receptor type, ...	275.0	[0..2]	[268..1478]
gi\|9507011, gi\|2... - gi\|9507011\|ref\|NP_062013.1\| protein tyrosine phosphatase, receptor type, S [Rattus norvegicus], gi\|2...	274.0	[0..2]	[268..1377]
gi\|74184363 - gi\|74184363\|dbj\|BAE25714.1\| unnamed protein product [Mus musculus]	273.0	[0..2]	[268..620]
h0012206 - null gi\|104487297 - gi\|104487297\|ref\|NP_570924.2\| protein tyrosine phosphatase, receptor type, sigma isoform 2 precursor...	272.0	[0..2]	[268..1424]

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Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILTQGPIHW KTLPKSVDDV DECAQGVEPS RPPYSTMDKF LQMIVQTKAT DVVMLGDFYE  60
   61 NDVVLRTIEI TSNFSKSKKE THTIRHYFYK GWIAQNGPEL SREILNVFKA VRKSKSVVVH 120
  121 CSTGIGRAAA FAFTELAYQT MMLNMRQTPT VGLDYVKLIQ DLRSMRAGAI YTPMQLAFSI 180
  181 IMLLDFVLEN ELSKETNIKY QQIRNSYLDL RKRKYRTSEE YMPDGGKTVD IDLNEEGNKR 240
  241 KPKPKQPKEK ITHQSLMDKI VKMLEDFNKN MKTARDDEKP AKNMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.09691
Match:	2fh7A
Description:	Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits