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View Structure Prediction Details

Protein: vha-8
Organism: Caenorhabditis elegans
Length: 226 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vha-8.

Description E-value Query
Range
Subject
Range
gi|45360895, gi|... - gi|45360895|ref|NP_989123.1| ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E [Xenopus (Silura...
251.0 [0..1] [226..1]

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Predicted Domain #1
Region A:
Residues: [1-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISDNDVQK QLRHMMAFIE QEANEKAEEI DAKAEEEFNI EKGRLVQQQR QKIMEFFEKK  60
   61 EKQVELQRKI QASNSLNAGR LRCLKAREDH IGAVLDEARS NLSRISGDAA RYPAILKGLV 120
  121 MQGLLQLLEK EVVLRCREKD LRLVEQLLPE CLDGLQKEWG STTKVVLDKQ NFLPSESAGG 180
  181 VELSARAGKI KVSSTLESRL ELIANQIVPQ VRTALFGPNP NRSFFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.045757
Match: 2dm9A
Description: No description for 2dm9A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle