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View Structure Prediction Details

Protein: lips-7
Organism: Caenorhabditis elegans
Length: 292 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-7.

Description E-value Query
Range
Subject
Range
gi|187033636, gi... - gi|39586959|emb|CAE62894.1| Hypothetical protein CBG07082 [Caenorhabditis briggsae], gi|187033636|em...
gi|157753888 - gi|157753888|ref|XP_001680656.1| Hypothetical protein CBG07082 [Caenorhabditis briggsae AF16]
228.0 [0..4] [289..2]
lips-15 - status:Confirmed UniProt:Q9NAK4 protein_id:CAB54398.1
211.0 [0..4] [281..3]

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Predicted Domain #1
Region A:
Residues: [1-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLIFIFSL TFTFSRISAD FTPHFRKFLH DSYGIAITGQ LERTDLGMDA SFGGKENPTE  60
   61 VPQNPVIIVH GITNKASRFG GTVAYLKSKG YKNSEIYGTT WGDSGRTPVG LVDMKCNYVK 120
  121 QIRAMIIAVR QYTGQKVDVI GYSMGSPLAR KAILGGQCVD TREILGAPLT ELVDTFLSVA 180
  181 GANYGSVLCI LPVPVGTCNK KNGLHCDSEF LQDINNQHRY EGSHVFSIFS TADEKIGFRS 240
  241 CGRPVSPIRG GTGFVKRDGL NHDQLMDTTH PLQRNFILYH SPKAPKSHRN VN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 1va4A
Description: Pseudomonas fluorescens aryl esterase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle