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View Structure Prediction Details

Protein: CE19186
Organism: Caenorhabditis elegans
Length: 163 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19186.

Description E-value Query
Range
Subject
Range
gi|114627384 - gi|114627384|ref|XP_001153928.1| PREDICTED: similar to L7a protein [Pan troglodytes]
216.0 [0..1] [157..175]
gi|21070334 - gi|21070334|gb|AAM34260.1|AF508309_1 ribosomal protein L7a [Equus caballus]
200.0 [0..1] [157..29]
gi|94386296 - gi|94386296|ref|XP_990387.1| PREDICTED: similar to 60S ribosomal protein L7a (Surfeit locus protein ...
198.0 [0..1] [157..83]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRNLDETM NESTVSEANG DATAPTTEKD EYQALCELVN PIAQPLANRK LAKKVYKLIK  60
   61 KASAGDKTLR EGIKDVQKEL RRNEKGICIL AGNVSPIDVY SHIPGICEEK EIPYVYIPSR 120
  121 EQLGLAVGHR RPSILIFVKP SGDFKELYDE VAEALRHLTV EAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 1zwzA
Description: No description for 1zwzA was found.

Predicted functions:

Term Confidence Notes
snoRNA binding 4.95788328272916 bayes_pls_golite062009
RNA binding 4.7078532107994 bayes_pls_golite062009
structural constituent of ribosome 3.68798692352408 bayes_pls_golite062009
structural molecule activity 3.12718364266877 bayes_pls_golite062009
2.493460131667 bayes_pls_golite062009
nucleic acid binding 2.39301463005357 bayes_pls_golite062009
binding 2.14339370639382 bayes_pls_golite062009
mRNA binding 1.63088955572344 bayes_pls_golite062009
protein binding 0.281497939080747 bayes_pls_golite062009
catalytic activity 0.264002643439785 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle