YRC Public Data Repository - Protein Structure Prediction

Protein:	rab-30
Organism:	Caenorhabditis elegans
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rab-30.

Description	E-value	Query Range	Subject Range
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	223.0	[0..3]	[212..7]
CRE16067, FL81_1... - RP15185 WBGene00061078 locus:Cre-rab-1 status:Confirmed, null gi\|157761211 - gi\|157761211\|ref\|XP_001672948.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae AF16] gi\|39588485, gi\|... - gi\|39588485\|emb\|CAE58008.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae], gi\|187038224\|em...	223.0	[0..3]	[212..7]
gi\|1370176 - gi\|1370176\|emb\|CAA98165.1\| RAB2A [Lotus japonicus]	223.0	[0..1]	[213..1]
gi\|50738954 - gi\|50738954\|ref\|XP_419342.1\| PREDICTED: similar to ras-related protein [Gallus gallus]	222.0	[0..5]	[212..197]
gi\|114675154 - gi\|114675154\|ref\|XP_001147785.1\| PREDICTED: similar to GTP-binding protein RAB11B [Pan troglodytes]	222.0	[0..2]	[212..136]
gi\|1208537, gi\|7... - pir\|\|S71559 GTP-binding protein rab2 - soybean, gi\|1208537\|gb\|AAA90955.1\| guanine nucleotide regulat...	222.0	[0..1]	[213..1]
gi\|16755592 - gi\|16755592\|gb\|AAL28022.1\| small GTPase Rab2 [Nicotiana tabacum]	222.0	[0..1]	[213..1]
RAB1B_ARATH - Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1	221.0	[0..1]	[212..1]
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	221.0	[0..3]	[214..4]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDYKYLFKV VLVGNAGVGK TCLVRKFTQG IFPPGQSATI GVDFMIKTVK VGNDKIKLQI  60
   61 WDTAGQERFR SITQSYYRSA HAIVLVYDVS CQPSFDCLPE WLGEIESYAN RRVLKILVGN 120
  121 KVDKGDEREV PERIGRDFSD VNQFDYFLET SALDATNVDQ LFEQVATRLT NDMKLTDERV 180
  181 HQFRADATNS SSSTGGPIKL IDRAQTQLNS CCTRQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2ew1A
Description:	Crystal Structure of Rab30 in complex with a GTP analogue
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits