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View Structure Prediction Details

Protein: fmo-3
Organism: Caenorhabditis elegans
Length: 512 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fmo-3.

Description E-value Query
Range
Subject
Range
gi|148707245, gi... - gi|148707245|gb|EDL39192.1| RIKEN cDNA 4831428F09 [Mus musculus], gi|109730629|gb|AAI12406.1| Flavin...
408.0 [0..3] [512..1]

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Predicted Domain #1
Region A:
Residues: [1-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPETKKQLLV VGAGASGLPS IRHALLYPNV EVTCFEKTNE VGGLWNYKPY KTELSTVMKS  60
   61 TVINTSKEMT SFSDFPPEDT MANFMHNTEM CRYLNNYAKH HELLKYIKFN NSVISIDRND 120
  121 DYDVTGKWKV RYSDETGAEK TRIFDGVMLC SGHHAIPHIP KPWPGQEKFK GRITHSHDYK 180
  181 DHKGYEDKTV VVVGIGNSGG DLAVELSRIS KQVYLVTRRG SWIFNRLFDR GEPLDMCLNS 240
  241 KFQMWLSETI PFPLVNWNFE RLLNMRFDHA KYGLKPNHPA MGAHITVNDE LPNRIASGTV 300
  301 RVKPGIKSFT ETSIHFEDGT FVENVDEVIL ATGFSFHFNL IENGNLVKVD ENKTDAFKYM 360
  361 FPMATADKNT LAVIGLVQVI GSIMPISEMQ ARVYLESFAA GRELPSKEEM FHNVIAKRQQ 420
  421 MANRYVESRR HTIQVDFLPY LHELGALIGC NPDMKALWMK NPLLAWRVYF GPCVPYVFRL 480
  481 NGPNTWQGAE QAIWDVDYRS ECATNSKAVR KE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.30103
Match: 1zmcA
Description: Crystal Structure of Human dihydrolipoamide dehydrogenase complexed to NAD+
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle