YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19110
Organism:	Caenorhabditis elegans
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19110.

Description	E-value	Query Range	Subject Range
gi\|157766614 - gi\|157766614\|ref\|XP_001675650.1\| Hypothetical protein CBG05606 [Caenorhabditis briggsae AF16] gi\|187034850, gi... - gi\|39585345\|emb\|CAE61667.1\| Hypothetical protein CBG05606 [Caenorhabditis briggsae], gi\|187034850\|em...	333.0	[0..55]	[244..1]
CE02925 - status:Confirmed UniProt:Q23633 protein_id:AAC48205.1	314.0	[0..55]	[227..1]
gi\|118370338, gi... - gi\|89300137\|gb\|EAR98125.1\| hypothetical protein TTHERM_00341250 [Tetrahymena thermophila SB210], gi\|... gi\|229595325 - gi\|229595325\|ref\|XP_001018370.3\| hypothetical protein TTHERM_00341250 [Tetrahymena thermophila]	75.0	[0..55]	[218..1]
gi\|71754687 - gi\|71754687\|ref\|XP_828258.1\| hypothetical protein [Trypanosoma brucei TREU927] gi\|70833644 - gi\|70833644\|gb\|EAN79146.1\| hypothetical protein, conserved [Trypanosoma brucei]	75.0	[0..57]	[208..5]
gi\|134115369, gi... - gi\|50256273\|gb\|EAL18999.1\| hypothetical protein CNBI0120 [Cryptococcus neoformans var. neoformans B-...	65.0	[0..58]	[223..3]
gi\|70872075 - gi\|70872075\|gb\|EAN86116.1\| hypothetical protein, conserved [Trypanosoma cruzi] gi\|71411435 - gi\|71411435\|ref\|XP_807967.1\| hypothetical protein [Trypanosoma cruzi strain CL Brener]	58.0	[0..61]	[207..6]
gi\|70800015, gi\|... - gi\|73544339\|ref\|XP_848064.1\| hypothetical protein [Leishmania major strain Friedlin], gi\|70800015\|gb...	53.0	[0..55]	[220..1]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLHLLYYPT TLKVFQKILK ILEILEIKKF WKLGWKILFF GIFLFLTIIK LASSMPRPPV  60
   61 LPPWVATWLL VSGVICLVDV IYTMFRPYTN APDGFVSNTL FYGWKLYSSV DIRYADTKDV 120
  121 VTCSTGRVML IEITLNFLAV YLALKRSRHA LLLAFTTSAF VFWKTFWYLV MYINPPPGTP 180
  181 SFFTDNYGYL GITLIFWIPN GVWVVMPFLA MCSLWNKLAL PVEYQEQENN NYEKPPGLST 240
  241 LSSP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits