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View Structure Prediction Details

Protein: CE19075
Organism: Caenorhabditis elegans
Length: 471 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19075.

Description E-value Query
Range
Subject
Range
gi|73981582 - gi|73981582|ref|XP_533056.2| PREDICTED: similar to selenium binding protein 1 [Canis familiaris]
701.0 [0..4] [471..138]

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Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPNCGLKCH GGPGYASPAD AIKGPREEVL FVTAPNAADG PDAIFTVDVN PESDTFCQVI  60
   61 SRVD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [65-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPHIGDEVHH TGWNACSSCH DKPTEKRSHL IVPCLNSDRI YIINVENERK IYLEHTIEPS  60
   61 KLHSLNLSFP HTSHCLADGN IMISTLGEAN GTPSGNFLLL D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [166-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKTFEPKGTW PADEKTVPFN YDFWYQPRRN VMISTEWGSP NHIKKGFNPA HVGEGLYGNS  60
   61 VHIFEW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.30103
Match: 1jofA
Description: 3-carboxy-cis,cis-mucoante lactonizing enzyme
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [232-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSKKYLQTID LPQPLGALPL EVRFLHEPTS EHAFVGCALG SGIFRIHPVE ENSTTHAATL  60
   61 VAFIPSKKVS GWALPEMPAL ITDILISMDD RFLYVSCWLH GDIRQYDISD PLKVKLNSQV 120
  121 YIGGSVHTES NVKVLEGEKP IEALYVKGRK IEGGPQMLQL SLDGKRLYVT TSLYKKWDDQ 180
  181 FYPEHVKSGA TMVQVNIDPE SGKMEINRDF LIDFGKIEGG PYLAHEMRYP GGDCTSDIWI 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.522879
Match: 1l0qA
Description: Surface layer protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.565955069185473 bayes_pls_golite062009
protein binding 0.188092612225384 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle