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View Structure Prediction Details

Protein: lst-4
Organism: Caenorhabditis elegans
Length: 164 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lst-4.

Description E-value Query
Range
Subject
Range
gi|338228 - gi|338228|gb|AAA36615.1| src-like tyrosine kinase (put.); putative
122.0 [0..5] [109..88]
gi|109000037 - gi|109000037|ref|XP_001111424.1| PREDICTED: Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene ho...
122.0 [0..5] [163..83]
FYN_MOUSE - Proto-oncogene tyrosine-protein kinase Fyn (EC 2.7.10.2) (p59-Fyn) - Mus musculus (Mouse)
121.0 [0..5] [109..88]
FYN_RAT - Tyrosine-protein kinase Fyn OS=Rattus norvegicus GN=Fyn PE=1 SV=1
gi|126310436 - gi|126310436|ref|XP_001368891.1| PREDICTED: similar to FYN oncogene related to SRC, FGR, YES isoform...
121.0 [0..5] [109..88]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVKAEYDF QSQPNTGELS ISAGEVLTVI RENIDGGWIE GRNVRGSVGL FPESYVTPYQ  60
   61 ASRPPPVLPP PLPPTSSGPP AASSRPFDDW GGASEVAAPP SYGAQHHHQP TPSVPEVTRS 120
  121 SYPSQNDDFD DEWTDEDDEQ VFLKFYFNFL IVQFLSVLFI PSNS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.0
Match: 1qcfA
Description: Hemapoetic cell kinase Hck; Hemopoetic cell kinase Hck; Haemopoetic cell kinase Hck
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle