YRC Public Data Repository - Protein Structure Prediction

Protein:	acbp-6
Organism:	Caenorhabditis elegans
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acbp-6.

Description	E-value	Query Range	Subject Range
gi\|73949054 - gi\|73949054\|ref\|XP_848899.1\| PREDICTED: similar to Acyl-CoA-binding protein (ACBP) (Diazepam binding...	122.0	[0..9]	[98..211]
gi\|113549007, gi... - gi\|50901174\|ref\|XP_463020.1\| putative Acyl-CoA-binding protein [Oryza sativa (japonica cultivar-grou...	117.0	[0..9]	[98..1]
gi\|37654308, gi\|... - gi\|37654308\|gb\|AAQ96259.1\| LRRGT00046 [Rattus norvegicus], gi\|109498524\|ref\|XP_001054001.1\| PREDICTE...	117.0	[0..8]	[96..98]
gi\|51555762, gi\|... - gi\|51555762\|dbj\|BAD38638.1\| putative protein product of HMFT0700 [Homo sapiens], gi\|26996542\|gb\|AAH4...	116.0	[0..2]	[91..3]
gi\|148707856, gi... - gi\|83921595\|ref\|NP_001033088.1\| diazepam binding inhibitor isoform 1 [Mus musculus], gi\|67511482\|emb...	115.0	[0..13]	[98..52]
gi\|114666699, gi... - gi\|114666701\|ref\|XP_001142572.1\| PREDICTED: acyl-Coenzyme A binding domain containing 4 isoform 5 [P...	114.0	[0..2]	[91..3]
ACBD5_XENTR - Acyl-CoA-binding domain-containing protein 5 OS=Xenopus tropicalis GN=acbd5 PE=2 SV=1	113.0	[0..12]	[110..9]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPISELEKKW TGLTFEIAAE EMRRLKSEPT DRERLKLYAL YKQALHGDIP NEDVYPVPAG  60
   61 DEVGRKKYAA WKSQKGANSE KCRADYVAIA EEMIKKYGRN IVRCKWNSEV WSVDY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	2fj9A
Description:	No description for 2fj9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits