YRC Public Data Repository - Protein Structure Prediction

Protein:	rab-28
Organism:	Caenorhabditis elegans
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rab-28.

Description	E-value	Query Range	Subject Range
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	191.0	[0..28]	[247..1]
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	189.0	[0..28]	[247..1]
gi\|4586580 - gi\|4586580\|dbj\|BAA76422.1\| rab-type small GTP-binding protein [Cicer arietinum]	189.0	[0..28]	[246..1]
gi\|1381678 - gi\|1381678\|gb\|AAB97115.1\| small GTP-binding protein [Glycine max]	189.0	[0..28]	[247..1]
gi\|421942, gi\|311907 - pir\|\|S34253 GTP-binding protein, ras-related - common tobacco, gi\|311907\|emb\|CAA51011.1\| ras-related...	188.0	[0..28]	[247..1]
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	188.0	[0..26]	[245..2]
gi\|7643790 - gi\|7643790\|gb\|AAF65510.1\| small GTP-binding protein [Capsicum annuum]	188.0	[0..28]	[247..1]
RAB1_DIPOM - Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1	187.0	[0..28]	[245..1]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTMGEDEAP ALPKKSPLPE KIDEADVDDD PDDKVIKIVV VGDGASGKTS ICQRFAKESF  60
   61 DKSYHQTLGL DFFSRRITLP HEMQVLVQVW DIGGQSIAGE MIDKYLTGAN IVFLVYDVTN 120
  121 SKSFENAVDW LSVVKKNTKS SETPVKLVLM GNKTDLEERR VVSVEAHKNF ATSNDMMPTY 180
  181 VSAKTGDTVF LTFRQAVAEV LNVGLSRAEV EADIEIVQGS VIEQPKQSDA SYARRSDQSR 240
  241 STSVCSIT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.154902
Match:	2hxsA
Description:	No description for 2hxsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits