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View Structure Prediction Details

Protein: bath-35
Organism: Caenorhabditis elegans
Length: 266 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bath-35.

Description E-value Query
Range
Subject
Range
bath-30 - status:Confirmed UniProt:Q8MXH8 protein_id:AAM98035.1
174.0 [0..4] [265..45]
gi|157753624 - gi|157753624|ref|XP_001680524.1| Hypothetical protein CBG17057 [Caenorhabditis briggsae AF16]
gi|187026025, gi... - gi|39580500|emb|CAE70470.1| Hypothetical protein CBG17057 [Caenorhabditis briggsae], gi|187026025|em...
172.0 [0..3] [264..39]
gi|37534558, gi|... - gi|37534558|ref|NP_921581.1| putative speckle-type protein [Oryza sativa (japonica cultivar-group)],...
166.0 [0..6] [256..73]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNGYADVDD LHVYVYCGNT PELRLQELVA DVKITIQPEN EKSCCIKKFL SLKDNKFESI  60
   61 AMSADFGDFD EMVYNYAIDG KCTIEADITI IKEVGDARAK LRDFGEETRD VSDVVINVQN 120
  121 EKFHVSKMFL AAQSSHFKLL FKNSNDSEIA LDGIIPEDFQ NFLELLYGEP ALTEDSVEGI 180
  181 LQIAARF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.154902
Match: 2f1zA
Description: Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [188-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVSTVIRKGE DFLLQKSEFS PEKKLQMSLK YNLENLKSKC LSEVKSVADI RSVLPKDIKE  60
   61 MDHSVMAELL EKSLGLQKT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2eqxA
Description: No description for 2eqxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle