YRC Public Data Repository - Protein Structure Prediction

Protein:	CE18981
Organism:	Caenorhabditis elegans
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18981.

Description	E-value	Query Range	Subject Range
gi\|76624236 - gi\|76624236\|ref\|XP_881307.1\| PREDICTED: similar to protein tyrosine phosphatase, receptor type, D is...	137.0	[0..3]	[114..1520]
gi\|56206872, gi\|... - gi\|56237715\|emb\|CAI25772.1\| protein tyrosine phosphatase, receptor type, D [Mus musculus], gi\|562072...	136.0	[0..3]	[114..1527]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHQFHSEQQ FRSLGMCVVS TFGSGRACTF IGALYAIHQL NNGVEPNIFE IMKTIKQQRP  60
   61 GAIESFPQYS GVYAIVLDYI SRKRGGKSDP VNKYINRFLA DLTEILPACS TLPVMNPSTE 120
  121 LH

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Detection Method:	PSI-BLAST
Confidence:	31.154902
Match:	1larA
Description:	RPTP Lar
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits