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View Structure Prediction Details

Protein: CE18974
Organism: Caenorhabditis elegans
Length: 621 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18974.

Description E-value Query
Range
Subject
Range
CE22605 - status:Predicted UniProt:Q9NA88 protein_id:CAB55009.1
526.0 [0..1] [593..1]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFTDTQLER LMSFLVEQTK DSIEPLVVLK VFTEYSNREN DGLSYRFYYD RFRTSVALNM  60
   61 AKLTEYTIED RIRVMFGFAG EVSDDFLTKI ETIGIVKLDE KKRICKFTSH DGKLKLEAVH 120
  121 SHSARMKR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 67.055517
Match: PF04435.9
Description: No description for PF04435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFLQVKGSA DLVRFMDFLV EKTKDTIVPV AACKVLTEYS KRENDGLSYS VYYRRFRRSV  60
   61 APNMAKFENY SIEERVRIMF GFAGKVADDF LEQIKTEGVV ELDDGKRICK YASHDGKLKL 120
  121 EGDHSRSARN KRKYAAYRKT DHHH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 72.677781
Match: PF04435.9
Description: No description for PF04435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [273-557]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSNAKDPKLS RKSGRKSDLE FSDKSDEDDV DSAISKCNFP KRARCEKSAD PELHESGESD  60
   61 DDEEMEDVGG IDGDPDLEPI DVEHDKIADR DVADNSSIDD IHENMPARVS ESDDDEYIGA 120
  121 VNEDPEHRLF DESHIDYLQS DEEMILEDTD DDVDYAGMVE AQPKPEPIDF HFDQINNRDN 180
  181 FQGNQEMMIE NNNRTPFLKR QQIDLSADNR ATSAESKTIL MHDFLKQLTQ FICFLESPKL 240
  241 AEIKQQIKES IGTGEDEKLQ VTDIHTVLEA FFFGVSRKIR LDASN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [558-621]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPAMKVKDFT LKFKFFILAL DFSELLELKK KVQGIIDEPE FNEKILPISD IRRSLQNLLF  60
   61 TISQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle