YRC Public Data Repository - Protein Structure Prediction

Protein:	sbt-1
Organism:	Caenorhabditis elegans
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sbt-1.

Description	E-value	Query Range	Subject Range
gi\|187034820, gi... - gi\|39585315\|emb\|CAE61637.1\| Hypothetical protein CBG05570 [Caenorhabditis briggsae], gi\|187034820\|em... gi\|157766554 - gi\|157766554\|ref\|XP_001675620.1\| Hypothetical protein CBG05570 [Caenorhabditis briggsae AF16]	370.0	[0..1]	[211..1]
7B2-PB - The gene 7B2 is referred to in FlyBase by the symbol Dmel\7B2 (CG1168, FBgn0041707). It is a protein...	235.0	[0..23]	[205..86]
gi\|55237601, gi\|... - gi\|58389937\|ref\|XP_317375.2\| ENSANGP00000011718 [Anopheles gambiae str. PEST], gi\|55237601\|gb\|EAA126...	224.0	[0..30]	[205..120]
gi\|125776780, gi... - gi\|54639135\|gb\|EAL28537.1\| GA11140-PA [Drosophila pseudoobscura], gi\|125776780\|ref\|XP_001359391.1\| G...	223.0	[0..23]	[208..380]
gi\|1813565 - gi\|1813565\|gb\|AAB41699.1\| 7B2 [Lymnaea stagnalis]	211.0	[0..35]	[211..77]
gi\|157126249, gi... - gi\|157126249\|ref\|XP_001654557.1\| neuroendocrine protein 7b2 [Aedes aegypti], gi\|108882529\|gb\|EAT4675...	211.0	[0..41]	[209..94]
gi\|158595631, gi... - gi\|73762568\|gb\|AAZ83722.1\| chaperone 7B2 precursor [Brugia malayi], gi\|170584407\|ref\|XP_001896992.1\|...	211.0	[0..34]	[211..31]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGAVSLVFF TVGVAAIYGL DLENAGDFVL PSGDFIDLIS RDSENLPDLS SFGVKHISGG  60
   61 AGEGEQKLLE EDNFQERQEV KVDNVLPAYC EPPNPCPVGF TKEHGCLEEF ENSAEFSRNY 120
  121 QADQHCICDQ EHMFNCAEKE AQDVSESLQK ILEENNMHAN TIAKKFHDKR SSDEYVPRRK 180
  181 RSIPSSAHKV NPYLQGEPLR SMQKKNGKHS W

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.974
Match:	1gp7A
Description:	Snake phospholipase A2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.389307920841874	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: