YRC Public Data Repository - Protein Structure Prediction

Protein:	CE18920
Organism:	Caenorhabditis elegans
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18920.

Description	E-value	Query Range	Subject Range
gi\|89359806, gi\|... - gi\|89359806\|ref\|ZP_01197626.1\| Ribosomal protein S12, bacterial and chloroplast form [Xanthobacter a...	178.0	[0..41]	[157..12]
RS12_CHLTE - 30S ribosomal protein S12 OS=Chlorobium tepidum GN=rpsL PE=3 SV=1 RS12_CHLTE - 30S ribosomal protein S12 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) ...	178.0	[0..44]	[157..1]
gi\|92910094, gi\|... - gi\|92910094\|ref\|ZP_01278870.1\| Ribosomal protein S12 [Mycobacterium sp. JLS], gi\|92432182\|gb\|EAS9151... gi\|92438565, gi\|... - gi\|92917301\|ref\|ZP_01285915.1\| Ribosomal protein S12 [Mycobacterium sp. KMS], gi\|92438565\|gb\|EAS9641...	177.0	[0..43]	[157..134]
gi\|60117171, gi\|... - gi\|60139438\|ref\|YP_209614.1\| ribosomal protein S12 [Huperzia lucidula], gi\|60117171\|ref\|YP_209505.1\|...	177.0	[0..44]	[157..1]
gi\|71730663, gi\|... - gi\|71899534\|ref\|ZP_00681690.1\| Ribosomal protein S12, bacterial and chloroplast form [Xylella fastid...	177.0	[0..16]	[157..21]
gi\|48855325 - gi\|48855325\|ref\|ZP_00309484.1\| COG0048: Ribosomal protein S12 [Cytophaga hutchinsonii] RS12_CYTH3 - 30S ribosomal protein S12 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rpsL PE=3 SV...	177.0	[0..44]	[157..1]
gi\|79685 - gi\|79685\|pir\|\|S04427 ribosomal protein S12 - Synechococcus sp. (PCC 6301) RS12_SYNP6 - 30S ribosomal protein S12 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsL ... RS12_SYNE7 - 30S ribosomal protein S12 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsL PE=3 SV=1	176.0	[0..44]	[157..1]
RS12_PROMM - 30S ribosomal protein S12 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpsL PE=3 SV=1 RS12_PROM3 - 30S ribosomal protein S12 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpsL PE=3 SV=1	176.0	[0..44]	[156..1]
gi\|194514216, gi... - gi\|254198523\|ref\|ZP_04904944.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei S13], gi\|194514... gi\|254190299, gi... - gi\|254190299\|ref\|ZP_04896807.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei Pasteur 52237],... gi\|217424713, gi... - gi\|217424713\|ref\|ZP_03456210.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei 576], gi\|217392... gi\|157810594, gi... - gi\|254300575\|ref\|ZP_04968020.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei 406e], gi\|19456... gi\|134283192, gi... - gi\|134283192\|ref\|ZP_01769893.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei 305], gi\|134245... RS12_BURP0 - 30S ribosomal protein S12 OS=Burkholderia pseudomallei (strain 1106a) GN=rpsL PE=3 SV=1 RS12_BURP6 - 30S ribosomal protein S12 OS=Burkholderia pseudomallei (strain 668) GN=rpsL PE=3 SV=1 gi\|226198176, gi... - gi\|226198176\|ref\|ZP_03793747.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei Pakistan 9], gi... RS12_BURP1 - 30S ribosomal protein S12 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsL PE=3 SV=1 RS12_BURTA - 30S ribosomal protein S12 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP... gi\|237504286, gi... - gi\|237814150\|ref\|YP_002898601.1\| ribosomal protein S12 [Burkholderia pseudomallei MSHR346], gi\|23750... RS12_BURPS - 30S ribosomal protein S12 OS=Burkholderia pseudomallei (strain K96243) GN=rpsL PE=3 SV=1 gi\|167912888 - gi\|167912888\|ref\|ZP_02499979.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei 112] RS12_BURPS - 30S ribosomal protein S12 OS=Burkholderia pseudomallei GN=rpsL PE=3 SV=1 gi\|167904623 - gi\|167904623\|ref\|ZP_02491828.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei NCTC 13177] gi\|194504988, gi... - gi\|254180336\|ref\|ZP_04886934.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei 1655], gi\|19450... gi\|167920848 - gi\|167920848\|ref\|ZP_02507939.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei BCC215] gi\|167838216 - gi\|167838216\|ref\|ZP_02465075.1\| 30S ribosomal protein S12 [Burkholderia thailandensis MSMB43] gi\|167826157 - gi\|167826157\|ref\|ZP_02457628.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei 9] gi\|167896241 - gi\|167896241\|ref\|ZP_02483643.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei 7894] gi\|167847669 - gi\|167847669\|ref\|ZP_02473177.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei B7210] gi\|167721581 - gi\|167721581\|ref\|ZP_02404817.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei DM98] gi\|167620741 - gi\|167620741\|ref\|ZP_02389372.1\| 30S ribosomal protein S12 [Burkholderia thailandensis Bt4] gi\|167817760 - gi\|167817760\|ref\|ZP_02449440.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei 91] gi\|167740555 - gi\|167740555\|ref\|ZP_02413329.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei 14] gi\|161358178, gi... - gi\|242315070\|ref\|ZP_04814086.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei 1106b], gi\|2421... gi\|167582627 - gi\|167582627\|ref\|ZP_02375501.1\| 30S ribosomal protein S12 [Burkholderia thailandensis TXDOH] gi\|254259564, gi... - gi\|254259564\|ref\|ZP_04950618.1\| 30S ribosomal protein S12 [Burkholderia pseudomallei 1710a], gi\|2542...	176.0	[0..44]	[157..1]
RS12_MAGSA - 30S ribosomal protein S12 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsL PE=3 S...	176.0	[0..44]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPRLGGFLA GFSSTISSFL PKTTASTLFT HQSSQFSTSF PAWRNNFLQF IHYRNGPPKR  60
   61 RARSKDKSAI SGYSHYKGIV LKTVIRHPKK PNSGNRKCAI VRLSTGAEVC AYIPNVGHNL 120
  121 QEHSQVLVKG GRRRDLISVK ANIVRGKYDC APAGGRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.09691
Match:	2f4vL
Description:	No description for 2f4vL was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits