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View Structure Prediction Details

Protein: CE18902
Organism: Caenorhabditis elegans
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18902.

Description E-value Query
Range
Subject
Range
gi|109130442 - gi|109130442|ref|XP_001093417.1| PREDICTED: similar to ATPase, H+ transporting, lysosomal accessory ...
416.0 [0..1] [324..107]

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Predicted Domain #1
Region A:
Residues: [1-63]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVLLVSAL VAACAASSLE IIAAPASLKF PDADATLKTT LISTLNENIL GLSARQVDGF  60
   61 SVS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [64-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDMFSRPRAL AVVTVIGADN LNLGGKTYST KSDGVENVGF DQDMALIFGA DRENVQVSAG  60
   61 GITGSMLALA AQQEAVDATV IKTKRSTLVK ELEAVYQLAA AIKSAGVQMD NNADVFRVSI 120
  121 TGLVGITESA QKEEAVADVK AAIEALTASI NNAY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [218-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGQAVIELLA FEAESGAAEK STESREIPNH NIQKRDTKSK TPTQLARENL QVTVPVSSDY  60
   61 PAIFAIFLGL VVILVVALIY IVVGMASIDP EKDSIIYRMT TTRMKKD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 78.309804
Match: PF07850.5
Description: No description for PF07850.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle