YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: dut-1
Organism: Caenorhabditis elegans
Length: 491 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dut-1.

Description E-value Query
Range
Subject
Range
gi|39595134, gi|... - gi|39595134|emb|CAE60171.1| Hypothetical protein CBG03725 [Caenorhabditis briggsae], gi|187035965|em...
gi|157745625 - gi|157745625|ref|XP_001667909.1| Hypothetical protein CBG03725 [Caenorhabditis briggsae AF16]
493.0 [0..1] [487..1]

Back

Predicted Domain #1
Region A:
Residues: [1-57]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLTVAAPCV QTVTEPSKME MQAESTSHIT IRFTEMVGDA QKPTYGSISS AGADLYS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 2d4lA
Description: No description for 2d4lA was found.

Predicted Domain #2
Region A:
Residues: [58-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEDVVVPANG KLCVSTGLQI ELPIGYYGRV APRSGLAAKH FIDVGAGVID SDYRGEVKVL  60
   61 LFNFNTTAFE VKTGDRIAKL ICEQIGNGTY EEVKSLPSTN RGAGGFGSTG ESTMNSETAN 120
  121 PATNLERITV RFTQLNENAQ TPTYGSEEAA GADLYSAEDI TVPAHGKCCV STGIQMELPF 180
  181 GYYGRVAPRS GLAAKHFIDV GAGVIDSDYR GEVKVLLFNF TDNAFEVKKG DRIAQLICEK 240
  241 IGHCVYEAAS ELENTDRGAG GFGSTGQNTM EA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.09691
Match: 2r9qA
Description: No description for 2r9qA was found.

Predicted Domain #3
Region A:
Residues: [330-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPALKKSKTE QIKTSATSVT IQITKSNDNA QMPTYGSAEA AGADLYSAED VTVPARGKLC  60
   61 VSTGIQMALP IGYYGRVAPR SGLAAKHFID VGAGVIDSDY RGEVKVLLFN FGENDFEVKK 120
  121 GDRIAQLVCE QIALCTYSKV ESLEVTERGA GGFGSTGQYI TL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.69897
Match: 1q5hA
Description: Human dUTP Pyrophosphatase complex with dUDP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleoside-triphosphate diphosphatase activity 5.64898078077484 bayes_pls_golite062009
dUTP diphosphatase activity 5.62861923551608 bayes_pls_golite062009
hydrolase activity 1.8120510491809 bayes_pls_golite062009
catalytic activity 1.71668532866244 bayes_pls_golite062009
pyrophosphatase activity 1.43042083356989 bayes_pls_golite062009
binding 1.21193927389015 bayes_pls_golite062009
peroxisome proliferator activated receptor binding 1.01014631701573 bayes_pls_golite062009
pyrimidine deoxyribonucleotide binding 0.378438138772693 bayes_pls_golite062009
protein binding 0.363750221984373 bayes_pls_golite062009
pyrimidine nucleotide binding 0.26077271033521 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle