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View Structure Prediction Details

Protein: nkb-3
Organism: Caenorhabditis elegans
Length: 317 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nkb-3.

Description E-value Query
Range
Subject
Range
gi|157772262 - gi|157772262|ref|XP_001677951.1| Hypothetical protein CBG07375 [Caenorhabditis briggsae AF16]
gi|187033443, gi... - gi|39596467|emb|CAE63086.1| Hypothetical protein CBG07375 [Caenorhabditis briggsae], gi|187033443|em...
389.0 [0..3] [317..2]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNGGRNGEE NKNLMNGEAK AEPETFAQFL YNKDKGTVLG RTGTSWCQIT VFYIIFYIFL  60
   61 SAFFIGCLSI FLRTLDPKVP RFYGKGTIIG VNPGVGYQPW LKENPDSTLI KFNLQDSKSW 120
  121 EPYVKQLDNY LSKYK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTNETRDCGA SDNNDALETD TDTFPCRFDL GLFEKANCGA KDQYGYKSGK PCVAVSLNRL  60
   61 IGWRPVNYDD GSVPEEIKGR YKPGSITINC EGATSFDKEH LGKVKYIPET GIDGRYYPYV 120
  121 FVPSYQQPIA MVKFDTIPRN KLVIVECRAY ASNIEHDIST RLGMVYFELF VEDKKPVAAP 180
  181 AA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle