YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: col-133
Organism: Caenorhabditis elegans
Length: 304 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-133.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
252.0 [0..48] [303..1518]

Back

Predicted Domain #1
Region A:
Residues: [1-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKQRLQAY RFVAYSAVTF SVVAVFSLCI TLPLVYNYVD GIKTQINHEI KFCKHSARDI  60
   61 FAEVNHIRSS PKNASRFARQ AGYGGDEGVD QGSEGAQGGS CSGCCLPGAA GPAGTPGKPG 120
  121 RPGRPGAAGL PGNPGRPPAQ PCEPITPPPC KPCPQGPAGA PGAPGPQGDA GAPGAPGQGS 180
  181 GAGAPGPAGP KGASGAPGNP GQAGAPGQPG ADAQSESIPG APGQAGPQGP PGPAGSPGAP 240
  241 GGPGQPGAPG QKGPSGAPGQ PGADGNPGAP GQPGQAGGAG EKGICPKYCA IDGGVFFEDG 300
  301 TRRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle