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View Structure Prediction Details

Protein: CE18702
Organism: Caenorhabditis elegans
Length: 722 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18702.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
530.0 [0..3] [563..1163]

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Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIEVVSALP HSTVHSAVLS RRHRSVICAG PYEVLPLEGC SEPLPSTSTL SELPIECLRL  60
   61 STDERTIGAA TNAILKVADI ITGHEVRNLT GHTLPITSLA ASKFNPYCWY TGSSDCDWTQ 120
  121 WDTRMNPSKI FGSKTPGVVR SIALSPGDRY VAVGTDETIQ IFDARQREFI KTFNCSGHAL 180
  181 ELHPSDVLLS SVGHDRIVRF FCLETFEMIS QSDPFLDDIQ ASAFDTHVMI AATNDSINLL 240
  241 TWEPCCDILT TVPLKNVEKV VNVNANGLDL DFICIGDNTE RLEMRTYAIE ELLSYSPSHE 300
  301 LCGSIYEEDE DVDNSPIDEV KALPEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.045757
Match: 2ovpB
Description: No description for 2ovpB was found.

Predicted Domain #2
Region A:
Residues: [327-410]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TELSNLPPRS PGLSCEETET SASPVNSSSS HSSPTSPVKP APVKHRSASQ KLPGKSTKTL  60
   61 NPKPAGSTRS VTPVSTKPPR TFGT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [411-556]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKSVIVSSKP SLSGYNNRAN PSPSMSDLRT TKSMAGSTTS LLSERAPKKR STSSRRNQEP  60
   61 ITITYIGRPR TPSEGDVAST VSSSTSRNRR PSPSVAKKTS PPSIYAITSS PAKRASSTAS 120
  121 GPTARRQNST SSVTSTTSAK TPVGVW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [557-722]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GACIETVHDI GIVAKKENRN IRRLKMLTSR RTSNVDIPPE VCSDEQLVLT ATRILSRRND  60
   61 WSLNSCHAYL PVIIDNIASV DVTNRAIALE GLAAIADTLG ERLVKFASMN SHRIGVDVAA 120
  121 EERAEKAKAC VQHLRSLVKK RDWYYKQLDE PSILKLDPIL ELLKKI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle