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View Structure Prediction Details

Protein: CE18580
Organism: Caenorhabditis elegans
Length: 341 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18580.

Description E-value Query
Range
Subject
Range
gi|39583174, gi|... - gi|39583174|emb|CAE61392.1| Hypothetical protein CBG05244 [Caenorhabditis briggsae], gi|187035102|em...
gi|157771542 - gi|157771542|ref|XP_001677591.1| Hypothetical protein CBG05244 [Caenorhabditis briggsae AF16]
374.0 [0..1] [341..1]

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Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETLPNPDS STATDRSVRS VFGNFRQLFS SCSFMRRKSS GVPIDDKLQQ LHQQFSTENE  60
   61 DRSRRSKERT ATTG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [75-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGGAAVASAA DRMSKRVASA SLAVRPQAKS SDLMCVCDSI DGNTVAKITS LPEGIEKREW  60
   61 IAHNVLGLFE HVNALCGTLS EVCTQQSCPH MSFPGTSKAI YTDERGKRQV YPAVQYIDCV 120
  121 ITQCESMSRQ EEIFPTKYGN KFNGNFEPAV KKMLSHLFHC MGHMYLKHWD VLGALQLRPQ 180
  181 CAIVFAHIAE LGRTFSLLDA KDQEQVDECV TEVRPILPVL SQTLSLDDPD HPHDGDRSSR 240
  241 VPSSKSGSWG GYPSPAVLSC KAYAQTC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.045757
Match: 1pi1A
Description: Crystal structure of a human Mob1 protein; toward understanding Mob-regulated cell cycle pathways.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle