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View Structure Prediction Details

Protein: CE18560
Organism: Caenorhabditis elegans
Length: 133 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18560.

Description E-value Query
Range
Subject
Range
CE06071 - WBGene00010519 status:Partially_confirmed TR:Q27502 protein_id:CAB00865.1
133.0 [0..4] [112..853]
gi|187023090, gi... - gi|39591333|emb|CAE73386.1| Hypothetical protein CBG20826 [Caenorhabditis briggsae], gi|187023090|em...
gi|157752750 - gi|157752750|ref|XP_001680087.1| Hypothetical protein CBG20826 [Caenorhabditis briggsae AF16]
131.0 [0..24] [122..142]

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Predicted Domain #1
Region A:
Residues: [1-63]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLQLSILM LLISLTACQT SDAPCQDDPL ADCHAYAGLC SNPMYTSFLD KYCPKTCGLC  60
   61 PDS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [64-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTLVPPTANP NCVDTNVHCK SWAKQGYCTS CFLDCAEKIQ NCAKSCGFCN PEACLNCKQR  60
   61 EKLPSNNFRN 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.0
Match: 1rc9A
Description: Crystal Structure of Stecrisp, a Member of CRISP Family from Trimeresurus Stejnegeri Refined at 1.6 Angstroms Resolution: Structual relationship of the two domains
Matching Structure (courtesy of the PDB):

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