| Protein: | rsa-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 404 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsa-1.
| Description | E-value | Query Range |
Subject Range |
|
|
273.0 | [0..8] | [383..166] |
|
Region A: Residues: [1-253] |
1 11 21 31 41 51
| | | | | |
1 MPTDEPSKRK SILPTIPTSL MLKKSNEALS DFERTFNDRV MDIFAENRRI DVEEFKKNAE 60
61 CFLNIIRSNK IDLNWGEGGE SRYVTITRLM KILKTSPQSI KDLLPHNTVS NFVKITNYNL 120
121 TIDITLLEEL VRTVIHAEES YIKLLPFSEN STEISSYSLQ DFVATHFIPI MIEEPENPVY 180
181 YTAYAVGTIF FLLGARRRDC VYLKDLLAST LLLQLEECIH AENHCLSPPK IDVFTVAQFR 240
241 TTLSEFRFLD SQR
|
| Detection Method: |  |
| Confidence: | 27.30103 |
| Match: | 1zmvA |
| Description: | Catalytic and ubiqutin-associated domains of MARK2/PAR-1: K82R mutant |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [254-404] |
1 11 21 31 41 51
| | | | | |
1 KGLLAPADLK FFRDGIFNEV FTKRIFEISI TYEDGRIDFK AFVDFVTALK FRHTTASAKY 60
61 HFEILDLKDD GLLDEEEIRS ISSFQLQNLP DYVPEDNSVN PEVATAELRD MMRLNQNGIT 120
121 LEEFLANRMN STFAGFLSNS DDYMKYERRE Q
|
| Detection Method: | |
| Confidence: | 26.69897 |
| Match: | 1degA |
| Description: | THE LINKER OF DES-GLU84 CALMODULIN IS BENT AS SEEN IN THE CRYSTAL STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.83594015708359 | bayes_pls_golite062009 |
| protein binding | 0.443981816396262 | bayes_pls_golite062009 |
| calcium ion binding | 0.292797014921594 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.18875717337722 | bayes_pls_golite062009 |
| cation binding | 0.122172315650146 | bayes_pls_golite062009 |
| metal ion binding | 0.122172315650146 | bayes_pls_golite062009 |
| ion binding | 0.121800848484808 | bayes_pls_golite062009 |
