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View Structure Prediction Details

Protein: col-124
Organism: Caenorhabditis elegans
Length: 291 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-124.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
253.0 [0..43] [289..1398]

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Predicted Domain #1
Region A:
Residues: [1-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIDSRIKAY RFVGYAALTF STIAVLSVCI TLPMMYNYIH HTRKVMHSDI VECKSEAQRL  60
   61 FSQVNRIPDL MMAHNRTARQ AGEGNGQCEG CCLPGAQGPP GTPGSAGRPG KPGAPGLNGN 120
  121 PGRPPKEPCE PLTPPPCKPC PEGPPGPAGP PGPDGNKGPL GPPGPPGPEG PNGEPGNKGP 180
  181 AGPPGPGGKP GPAGPPGENG NNGEPQPGAP GEPGQPGQPG QRGPAGEPGK DGSPGGQGEK 240
  241 GASGEPGQPG RDGQPGHPGQ PGKDGRPGEK GVCPKYCALD GGVFFEDGHR R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle