YRC Public Data Repository - Protein Structure Prediction

Protein:	maa-1
Organism:	Caenorhabditis elegans
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for maa-1.

Description	E-value	Query Range	Subject Range
gi\|157773907 - gi\|157773907\|ref\|XP_001665019.1\| hypothetical protein CBG13297 [Caenorhabditis briggsae AF16] gi\|187028858, gi... - gi\|39584827\|emb\|CAE67722.1\| Hypothetical protein CBG13297 [Caenorhabditis briggsae], gi\|187028858\|em...	327.0	[0..1]	[262..1]
gi\|109116301 - gi\|109116301\|ref\|XP_001115247.1\| PREDICTED: similar to acyl-Coenzyme A binding domain containing 4 [...	282.0	[0..4]	[259..16]
ACBD4_RAT - Acyl-CoA-binding domain-containing protein 4 OS=Rattus norvegicus GN=Acbd4 PE=1 SV=1	281.0	[0..4]	[259..14]
gi\|20810544, gi\|... - gi\|209364592\|ref\|NP_001129177.1\| acyl-Coenzyme A binding domain containing 4 isoform 2 [Homo sapiens...	281.0	[0..4]	[259..16]
gi\|30794460, gi\|... - gi\|30794460\|ref\|NP_080264.1\| acyl-Coenzyme A binding domain containing 4 isoform 1 [Mus musculus], g...	279.0	[0..4]	[259..14]
gi\|114666703, gi... - gi\|114666709\|ref\|XP_523669.2\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114666...	278.0	[0..4]	[259..16]
gi\|73965478 - gi\|73965478\|ref\|XP_548051.2\| PREDICTED: similar to acyl-Coenzyme A binding domain containing 4 isofo...	262.0	[0..4]	[259..16]
ACBD4_BOVIN - Acyl-CoA-binding domain-containing protein 4 OS=Bos taurus GN=ACBD4 PE=2 SV=1	261.0	[0..4]	[259..16]
gi\|220945796, gi... - gi\|220955552\|gb\|ACL90319.1\| CG8814-PA [synthetic construct], gi\|220945796\|gb\|ACL85441.1\| CG8814-PA [... CG8814-PA - This gene is referred to in FlyBase by the symbol Dmel\CG8814 (CG8814, FBgn0031478). It is a protein...	248.0	[0..4]	[259..8]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFETAVFI VQNLPKDGPI KTSTDEKLNF YALFKQATHG KCDLPKPSFY DIQGVYKWNA  60
   61 WNKLDNMTMD EAKQAYVDSI VQKIREV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2copA
Description:	Solution structure of RSGI RUH-040, an ACBP domain from human cDNA
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [88-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKEYKTEEWM KGDTYELLAP KFEVLGVLEG KDQAVEHPKK TENKETENET DNVETPNSSA  60
   61 CILSDNEYAD AIDDEIQSRS SSFTEPHNSF NRRISRQSSL KSSCHRLEKE LKVITESIDK 120
  121 LGKAVEERHN LLIGLMKKAT VYVLVPRVTS WKTIIFFVFW PFVTKFLLRW LRRFLRLLM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.505	a.25.2	Thermoplasma ferritin-like 4-helical bundle
View	Download	0.342	a.75.1	Ribosomal protein S7
View	Download	0.276	a.133.1	Phospholipase A2, PLA2
View	Download	0.210	a.1.1	Globin-like
View	Download	0.204	a.25.2	Thermoplasma ferritin-like 4-helical bundle

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits