YRC Public Data Repository - Protein Structure Prediction

Protein:	CE18481
Organism:	Caenorhabditis elegans
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18481.

Description	E-value	Query Range	Subject Range
gi\|221323828 - gi\|221323828\|ref\|ZP_03605122.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... 6PGD_BACSU - 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating OS=Bacillus subtilis (strain 16... gi\|221319552 - gi\|221319552\|ref\|ZP_03600846.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... gi\|221314629 - gi\|221314629\|ref\|ZP_03596434.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... 6PGD2_BACSU - 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4	220.0	[0..1]	[291..1]
gi\|52348807, gi\|... - gi\|52786305\|ref\|YP_092134.1\| 6-phosphogluconate dehydrogenase [Bacillus licheniformis ATCC 14580], g...	217.0	[0..1]	[291..1]
gi\|56420879, gi\|... - gi\|56420879\|ref\|YP_148197.1\| 6-phosphogluconate dehydrogenase [Geobacillus kaustophilus HTA426], gi\|...	215.0	[0..1]	[291..1]
gi\|89099010, gi\|... - gi\|89099010\|ref\|ZP_01171889.1\| 6-phosphogluconate dehydrogenase [Bacillus sp. NRRL B-14911], gi\|8908...	215.0	[0..1]	[292..1]
gi\|78691626, gi\|... - gi\|78691626\|ref\|ZP_00856232.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella sp. MR-7], gi\|7850897...	215.0	[0..1]	[296..1]
gi\|160860401, gi... - gi\|160874879\|ref\|YP_001554195.1\| 6-phosphogluconate dehydrogenase NAD-binding [Shewanella baltica OS... gi\|151364864, gi... - gi\|153000246\|ref\|YP_001365927.1\| 6-phosphogluconate dehydrogenase NAD-binding [Shewanella baltica OS...	213.0	[0..1]	[297..1]
gi\|117920995, gi... - gi\|78688091\|ref\|ZP_00852814.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella sp. ANA-3], gi\|785041...	213.0	[0..1]	[297..1]
gi\|113885410, gi... - gi\|82498193\|ref\|ZP_00883704.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella sp. MR-4], gi\|8240382...	213.0	[0..1]	[297..1]
gi\|47125249, gi\|... - gi\|47125249\|gb\|AAH70849.1\| MGC84587 protein [Xenopus laevis], gi\|147898679\|ref\|NP_001084759.1\| hypot...	213.0	[0..4]	[297..35]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTGFIGLG NMGGHMARNL IKNGKKLIVY DVNKAVVQEF KAEGCEVAAH PADIAAASKE  60
   61 IITVLPSSPH VKAVYQGEAG IFKTIQPGTL CMDSSTIDQI VSLEVAQAAA LLKAEYIDAP 120
  121 ISGGVTGAQQ ATLTFMVGAG NDATFKRAEA VLSLMGKNIV NLGAVGNGTA AKICNNMLLG 180
  181 IQMVAVAETM NLGISMGLDA KALAGIVNTS SGRCWSSDTY NPVPGVIENI PSCRGYAGGF 240
  241 GTTLMAKDLS LAQNASTNTQ APTPMGSLAH QIYRILARDP QYQAKDFGVV YQFLKKQNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.69897
Match:	2i9pA
Description:	No description for 2i9pA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits