YRC Public Data Repository - Protein Structure Prediction

Protein:	lec-3
Organism:	Caenorhabditis elegans
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lec-3.

Description	E-value	Query Range	Subject Range
lec-2 - galactoside-binding lectin status:Confirmed UniProt:Q20684 protein_id:CAA91327.2	330.0	[0..1]	[277..968]
gi\|3341815 - gi\|3341815\|gb\|AAD11972.1\| galectin [Haemonchus contortus]	324.0	[0..1]	[278..1]
gi\|1935058, gi\|5... - gi\|5070261\|gb\|AAD39095.1\|AF105337_1 galectin GAL-1 [Teladorsagia circumcincta], gi\|1935058\|gb\|AAC475...	323.0	[0..1]	[278..1]
gi\|433317 - gi\|433317\|gb\|AAA20541.1\| beta-galactoside-binding lectin	313.0	[0..2]	[278..4]
gi\|157751472 - gi\|157751472\|ref\|XP_001679448.1\| Hypothetical protein CBG02815 [Caenorhabditis briggsae AF16] gi\|39597215, gi\|... - gi\|39597215\|emb\|CAE59442.1\| Hypothetical protein CBG02815 [Caenorhabditis briggsae], gi\|187037107\|em...	312.0	[0..2]	[278..4]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPKSFNIP YRSKLTERIE PGQTLIIRGK TIDESKRFNI NLHKDSPDFS GNDVPLHLSI  60
   61 RFDEGKIVYN AYTKGTWGKE ERAKNPIKKG DDFDIRIRAH DSKFQVSINH KEVKNFEHRI 120
  121 PLNSVSHLSI DGDVVLNHVQ WGGKYYPVPY ESGIAADG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	2dycA
Description:	No description for 2dycA was found.

Predicted Domain #2

Region A:
Residues: [159-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVPGKTLVVY GTPEKKAKKF NINLLKKNGD IALHFNPRFD EKSVVRNSLV NGEWGNEERE  60
   61 GKNPFERLTA FDLEIRNEEF AFQIFVNGER FASYAHRVDP HDIAGLQIQG DIELTGIQVV 120
  121 NNQPAQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.39794
Match:	1x50A
Description:	Solution structure of the C-terminal gal-bind lectin domain from human galectin-4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits