YRC Public Data Repository - Protein Structure Prediction

Protein:	CE18464
Organism:	Caenorhabditis elegans
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18464.

Description	E-value	Query Range	Subject Range
gi\|157759427 - gi\|157759427\|ref\|XP_001672057.1\| Hypothetical protein CBG13507 [Caenorhabditis briggsae AF16] gi\|39587892, gi\|... - gi\|39587892\|emb\|CAE67910.1\| Hypothetical protein CBG13507 [Caenorhabditis briggsae], gi\|187028539\|em...	343.0	[0..1]	[292..1]
gi\|66514411 - gi\|66514411\|ref\|XP_395323.2\| PREDICTED: similar to IMP4, U3 small nucleolar ribonucleoprotein, homol...	323.0	[0..1]	[284..1]
gi\|91090574 - gi\|91090574\|ref\|XP_972242.1\| PREDICTED: similar to IMP4, U3 small nucleolar ribonucleoprotein, homol...	322.0	[0..1]	[284..1]
gi\|37654250 - gi\|37654250\|gb\|AAQ96230.1\| LRRGT00017 [Rattus norvegicus]	321.0	[0..12]	[291..12]
gi\|118777519, gi... - gi\|118777519\|ref\|XP_308117.3\| AGAP003890-PA [Anopheles gambiae str. PEST], gi\|116132694\|gb\|EAA03875....	317.0	[0..1]	[291..1]
gi\|55729975 - gi\|55729975\|emb\|CAH91713.1\| hypothetical protein [Pongo abelii] gi\|55729975\|emb\|... - hypothetical protein [Pongo pygmaeus]	315.0	[0..12]	[284..11]
gi\|169146224, gi... - gi\|50540508\|ref\|NP_001002719.1\| IMP4, U3 small nucleolar ribonucleoprotein, homolog [Danio rerio], g...	315.0	[0..1]	[284..1]
IMP4 - IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) gi\|124000169, gi... - gi\|157929232\|gb\|ABW03901.1\| IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) [synthetic c...	315.0	[0..12]	[284..12]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRRENRLRR EFIFRKSLEE KQKSLEEKRE KIRNALENNT KIDYNLRKDA IELAKGSDWG  60
   61 GQQYETDSEY RW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [73-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGAQDPKIVI TTSRDPSSRL KMFAKEMKLI FPNAQRINRG HYDVKQVVQA SKAQDSTDLI  60
   61 IFTETRGNPD GMLVCHLPFG PTAFFSMANV VMRHDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	2cxhA
Description:	Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
aminoacyl-tRNA ligase activity	3.58650371779212	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	3.58624422951947	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	3.58624422951947	bayes_pls_golite062009
ligase activity	2.71574082295198	bayes_pls_golite062009
proline-tRNA ligase activity	2.35871952544841	bayes_pls_golite062009
binding	1.73857064375258	bayes_pls_golite062009
catalytic activity	0.902495165806215	bayes_pls_golite062009
protein binding	0.358563180490135	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [169-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNCGTMSEQY PHLIFDNLNS KLGHRFTTIL KHLFPVPKPD SKRIITFSNS EDYISFRHHV  60
   61 YKTENDGEVE LTEAGPRFEL KPYQIKLGTL ETLAAAEDEW VLRSYTNTAR KRTFLSISRA 120
  121 DDDE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.68
Match:	2cxhA
Description:	Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: