YRC Public Data Repository - Protein Structure Prediction

Protein:	ndx-2
Organism:	Caenorhabditis elegans
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ndx-2.

Description	E-value	Query Range	Subject Range
gi\|39592916, gi\|... - gi\|39592916\|emb\|CAE62530.1\| Hypothetical protein CBG06639 [Caenorhabditis briggsae], gi\|187034190\|em...	147.0	[0..17]	[223..8]
gi\|114629362, gi... - gi\|114629364\|ref\|XP_001138158.1\| PREDICTED: nudix-type motif 5 isoform 9 [Pan troglodytes], gi\|11462...	143.0	[0..16]	[221..2]
gi\|60655443 - gi\|60655443\|gb\|AAX32285.1\| nudix-type motif 5 [synthetic construct] NUDT5 - nudix (nucleoside diphosphate linked moiety X)-type motif 5	143.0	[0..16]	[221..2]
gi\|61372656, gi\|... - gi\|61372656\|gb\|AAX43884.1\| nudix-type motif 5 [synthetic construct], gi\|61368355\|gb\|AAX43161.1\| nudi...	143.0	[0..16]	[221..2]
gi\|109088211, gi... - gi\|109088211\|ref\|XP_001083539.1\| PREDICTED: nudix (nucleoside diphosphate linked moiety X)-type moti...	140.0	[0..16]	[221..2]
NUDT5_RAT - ADP-sugar pyrophosphatase OS=Rattus norvegicus GN=Nudt5 PE=2 SV=1	140.0	[0..16]	[221..2]
NUDT5_PONAB - ADP-sugar pyrophosphatase OS=Pongo abelii GN=NUDT5 PE=2 SV=1 NUDT5_PONPY - ADP-sugar pyrophosphatase - Pongo pygmaeus (Orangutan)	136.0	[0..16]	[221..2]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSATSPTN GVDKNKNEEM VATPANCPYQ LFNQEVVWNG KWIQTRQVGF KTHTGQVGVW  60
   61 QSVHRNTKPV EASADGVSII ARVRKQGKLY IVLVKQYRIP CGKLCLELPA GLIDAGETAQ 120
  121 QAAIRELKEE TGYVSGKVVM ESKLCFLDPG LTDDSQCLVV VDVDGDAPEN QNPVQVLDST 180
  181 ESIEVLLVEQ SALMAYVTNL DSSSIVVEST LLAYAMGIQF ATI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	2dscA
Description:	No description for 2dscA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits