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View Structure Prediction Details

Protein: knl-3
Organism: Caenorhabditis elegans
Length: 343 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for knl-3.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
185.0 [0..5] [341..1920]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKSNDTTF SVRAALFASP VGSSSAVPKK KVAREVPRAG PPVFALEHDV SEVTDRNKDG  60
   61 TFLAADACAS GPTLKVPDET QGCPETFSVS EHED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [95-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDDVEPMEVD GTIVPSPQRA TPTRGVTPCE KSTTPRRRSS RKSMPTPGKR LFFTSKDTTN  60
   61 EDRKADDSTQ LELLMAKIPQ EMSGYMKKLA TDIKEMSQYD AQLARNIDDM EAVFKSRETK 120
  121 LKSAIEIAKD SFISSALPLR LETLDMTLRK EESPNDIVAR LHGSFLDKTQ DAGNVNTAQK 180
  181 ENQQLEDERG MLEEKLESLN KIKREKDEFL AKMRKEEEEA LARREEIKQG FERIDALMSK 240
  241 IKPIPIFEF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.30103
Match: 2i1jA
Description: No description for 2i1jA was found.

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