| Protein: | hda-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 465 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hda-3.
| Description | E-value | Query Range |
Subject Range |
|
|
514.0 | [0..1] | [462..1] |
|
Region A: Residues: [1-381] |
1 11 21 31 41 51
| | | | | |
1 MSLQHSKSRV SYYYDGDFGN FYYGQGHPMK PHRVRMTHSL IVNYGLYRKL NVMRPARASF 60
61 SEITRYHSDD YINFLRNVKS DNMSTFTDQM ARFSVGEDCP VFDGMYEFCQ LSCGGSLAAA 120
121 ARLNRQESEI AINWMGGLHH AKKSEASGFC YSNDIVLAIL ELLKHHKRVL YIDIDVHHGD 180
181 GVEEAFYTTD RVMTVSFHKH GEYFPGTGDL KDVGAGSGKY YALNVPLRDG VDDVTYERIF 240
241 RTIMGEVMAR FQPEAVVLQC GADSLAGDRL GVFNLTTYGH GKCVEYMKSF NVPLLLVGGG 300
301 GYTIRNVSRC WLYETAIALN QEVSDDLPLH DYFDYFIPDY KLHIKPLAAL SNFNTPEFID 360
361 QTIVALLENL KQLPHVPSVQ M
|
| Detection Method: |  |
| Confidence: | 92.39794 |
| Match: | 1t64A |
| Description: | Crystal Structure of human HDAC8 complexed with Trichostatin A |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [382-465] |
1 11 21 31 41 51
| | | | | |
1 QSISTSCDSI VKTFDEKLIR DHQNDDVRVT QFEEDVQVED SAEFYDGQEP ETKNIQSMKR 60
61 HASPICAAQE EMKKNRIDGG ENVA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
