YRC Public Data Repository - Protein Structure Prediction

Protein:	CE18102
Organism:	Caenorhabditis elegans
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18102.

Description	E-value	Query Range	Subject Range
CE12322 - status:Partially_confirmed UniProt:Q94285 protein_id:AAB09126.1	212.0	[0..1]	[266..1]
gi\|187030858, gi... - gi\|39583569\|emb\|CAE65673.1\| Hypothetical protein CBG10739 [Caenorhabditis briggsae], gi\|187030858\|em... gi\|157758445 - gi\|157758445\|ref\|XP_001671566.1\| Hypothetical protein CBG10739 [Caenorhabditis briggsae AF16]	182.0	[0..5]	[266..8]
gi\|152976184, gi... - gi\|89203212\|ref\|ZP_01181903.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	176.0	[0..17]	[265..378]
gi\|57866746, gi\|... - gi\|57866746\|ref\|YP_188413.1\| DNA polymerase III PolC [Staphylococcus epidermidis RP62A], gi\|57637404...	174.0	[0..17]	[265..380]
DPO3_STAEP - (Q8CPG6) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII) DPO3_STAES - DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain ATCC 12228) GN=polC PE=3 SV=1	174.0	[0..17]	[265..386]
gi\|75760862, gi\|... - gi\|75760862\|ref\|ZP_00740876.1\| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar isra...	174.0	[0..17]	[265..380]
gi\|47569095, gi\|... - gi\|47569095\|ref\|ZP_00239784.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereu...	173.0	[0..17]	[265..378]
DPO3_BACCR - DNA polymerase III PolC-type OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 ... gi\|229146389, gi... - gi\|229146389\|ref\|ZP_04274760.1\| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24], gi\|2286370...	173.0	[0..17]	[265..380]
DPO3_OCEIH - DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /... DPO3_OCEIH - DNA polymerase III polC-type OS=Oceanobacillus iheyensis GN=polC PE=3 SV=1	173.0	[0..17]	[257..374]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSINFTRTPR LLLDTVAHYS SFLESTKLVK TREVKKPPRY PNFSLKKDTK NQKMSQHFDY  60
   61 LLVLDFEATC QDNWKGPMHP VQEIIEFPVV QLSTADWSEI RRFHQYVKPT ECPRLTSFCT 120
  121 SLTGIIQEMV DEKPTLPQVL SEFDSWLKED SRLEKGKFAF VTCGDWDLKV ALPNEAKFKN 180
  181 IGIPEYFNQW INVKKASAEH TNHFAKGIAQ LLAIYKLQHQ GRHHSGIDDV ANICEIVRCL 240
  241 GMNGHNYQIT GSKDTMTRRV FRDARK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	1zbuA
Description:	No description for 1zbuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits