YRC Public Data Repository - Protein Structure Prediction

Protein:	arx-7
Organism:	Caenorhabditis elegans
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arx-7.

Description	E-value	Query Range	Subject Range
gi\|29437214, gi\|... - gi\|55962329\|emb\|CAI11660.1\| actin related protein 2/3 complex, subunit 5B [Danio rerio], gi\|41393173...	243.0	[0..1]	[152..1]
gi\|140833161, gi... - gi\|89268741\|emb\|CAJ82876.1\| actin related protein 2/3 complex, subunit 5, 16kDa [Xenopus tropicalis]...	237.0	[0..1]	[152..1]
ARPC5_MOUSE - Actin-related protein 2/3 complex subunit 5 OS=Mus musculus GN=Arpc5 PE=1 SV=3 tr\|M3WMY0\|M3WMY0... - Actin-related protein 2/3 complex subunit 5 OS=Felis catus GN=ARPC5 PE=3 SV=1 CCDS1357.1_1 - null tr\|G3MXC8\|G3MXC8... - Isoform of Q3SYX9, Actin-related protein 2/3 complex subunit 5 OS=Bos taurus GN=ARPC5 PE=1 SV=1 gi\|67970491 - gi\|67970491\|dbj\|BAE01588.1\| unnamed protein product [Macaca fascicularis]	236.0	[0..1]	[152..1]
gi\|149243065, gi... - gi\|56966198\|pdb\|1U2V\|G Chain G, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND Calcium, gi\|56...	236.0	[0..1]	[152..1]
gi\|195562237, gi... - gi\|197251940\|ref\|NP_001127829.1\| actin related protein 2/3 complex, subunit 5, 16kDa [Sus scrofa], g... ARPC5 - actin related protein 2/3 complex, subunit 5, 16kDa ARPC5_PONPY - Actin-related protein 2/3 complex subunit 5 - Pongo pygmaeus (Orangutan) gi\|55588898 - gi\|55588898\|ref\|XP_514050.1\| PREDICTED: hypothetical protein XP_514050 [Pan troglodytes] ARPC5_PONAB - Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii GN=ARPC5 PE=2 SV=3 gi\|157170272 - gi\|157170272\|gb\|AAI52790.1\| Actin related protein 2/3 complex, subunit 5, 16kDa [synthetic construct... ARPC5_RAT - Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus GN=Arpc5 PE=1 SV=3	236.0	[0..1]	[152..1]
gi\|39595534, gi\|... - gi\|39595534\|emb\|CAE60572.1\| Hypothetical protein CBG04201 [Caenorhabditis briggsae], gi\|187036351\|em... gi\|157746395 - gi\|157746395\|ref\|XP_001668293.1\| Hypothetical protein CBG04201 [Caenorhabditis briggsae AF16]	234.0	[0..1]	[152..1]
gi\|147904174, gi... - gi\|51950175\|gb\|AAH82419.1\| MGC83272 protein [Xenopus laevis], gi\|147904174\|ref\|NP_001087884.1\| MGC83...	234.0	[0..1]	[152..1]
gi\|542156622\|ref... - PREDICTED: actin-related protein 2/3 complex subunit 5 isoform X1 [Zonotrichia albicollis] gi\|71896007, gi\|... - gi\|71896007\|ref\|NP_001026732.1\| actin related protein 2/3 complex subunit 5 [Gallus gallus], gi\|5312...	234.0	[0..1]	[152..1]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNMQNTSY RKLDVDSFDP EQYDENDETV DTPGLGPDER AVQGFLSSNR LEDALHAALL  60
   61 SPPLKTKDQN VKDRATQLVT KVLQSFKNAE IEATVQKLSI EESDILMKYV YKSMEIGADA 120
  121 AVCQSLLAWH AQLVAKFGHG AIMRVFSGRQ RL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	1k8kG
Description:	Arp2/3 complex 16 kDa subunit ARPC5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
actin binding	4.05206194993572	bayes_pls_golite062009
cytoskeletal protein binding	2.8232927372914	bayes_pls_golite062009
structural constituent of cytoskeleton	1.81816151576197	bayes_pls_golite062009
binding	1.47072140214723	bayes_pls_golite062009
protein binding	0.727270535642847	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: