YRC Public Data Repository - Protein Structure Prediction

Protein:	cpi-1
Organism:	Caenorhabditis elegans
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cpi-1.

Description	E-value	Query Range	Subject Range
gi\|39584230, gi\|... - gi\|39584230\|emb\|CAE61605.1\| Hypothetical protein CBG05524 [Caenorhabditis briggsae], gi\|187035062\|em... gi\|157756755 - gi\|157756755\|ref\|XP_001670721.1\| Hypothetical protein CBG05524 [Caenorhabditis briggsae AF16]	141.0	[0..1]	[138..1]
gi\|109093125 - gi\|109093125\|ref\|XP_001097284.1\| PREDICTED: cystatin SA [Macaca mulatta]	132.0	[0..21]	[132..30]
gi\|192912, gi\|109759 - gi\|192912\|gb\|AAA63298.1\| cystatin C, pir\|\|A36163 cystatin C precursor - mouse	129.0	[0..4]	[131..9]
gi\|113205858, gi... - gi\|113205858\|ref\|NP_001038067.1\| cystatin C [Sus scrofa], gi\|110006616\|gb\|ABG48755.1\| cystatin C [Su...	129.0	[0..16]	[132..30]
CYTC_SAISC - Cystatin-C OS=Saimiri sciureus GN=CST3 PE=2 SV=1	129.0	[0..10]	[132..24]
CST1 - cystatin SN	129.0	[0..21]	[132..30]
gi\|55651412 - gi\|55651412\|ref\|XP_514555.1\| PREDICTED: similar to Cystatin SA precursor (Cystatin S5) isoform 3 [Pa...	128.0	[0..21]	[132..30]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFILLIALV FAVLDGINCQ IAGGLSDVNA SEYTGAAWNS VPEINSKNNG QNYMVPIKVV  60
   61 KAQVQVVAGT NTVLEVLVGE STCPRQGSVQ ASQVTAANCP LKSGGKRELY KVSIWEKPWE 120
  121 NFKQTKAEKI RGVKPDEKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.30103
Match:	1g96A
Description:	Cystatin C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits