YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: clpf-1
Organism: Caenorhabditis elegans
Length: 428 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clpf-1.

Description E-value Query
Range
Subject
Range
CLP1_BOVIN - Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Bos taurus GN=CLP1 PE=2 SV=1
gi|73982630 - gi|73982630|ref|XP_852672.1| PREDICTED: similar to Pre-mRNA cleavage complex II protein Clp1 [Canis ...
406.0 [0..5] [423..11]

Back

Predicted Domain #1
Region A:
Residues: [1-428]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEENVQEFV LKEDCELRFA AGDDSDVCLE LVKGYAEIFG TELLLNKKYT FPAKSRVAAF  60
   61 TWKGATIELV GTTESAYVAE STPMVIYLNI HAAMEEVRKK REEQAAGNSN KAKGPRLLLV 120
  121 GPTDVGKTTV SRILCNYSVR QGRTPIFVEL DVGQNSVSVP GTVAAVLVQK TADVIDGFER 180
  181 NQPIVFNFGH TSPSANLSLY EALFKEMATT LNAQIQENDE AKIGGMIINT CGWVDGEGYK 240
  241 CIVKAASAFE VDVVIVLDHE RLYSDLSKEL PEFVRLTHVP KSGGVEQRTG QIRSKMRGEN 300
  301 VHRYFYGTRA NNLYPFTFDV SFDDVTLCKI GAEQLPDSCL PFGMEVENHE TKLVIMEPSA 360
  361 DIKHHLFAFS RSTKADENVL KSPVFGFCLV TEVDLEKRTM SILCPQRTIP SKVLVFSDIT 420
  421 HLDDQIKR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.30103
Match: 2npiA
Description: No description for 2npiA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle