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View Structure Prediction Details

Protein: lips-9
Organism: Caenorhabditis elegans
Length: 302 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-9.

Description E-value Query
Range
Subject
Range
gi|39597170, gi|... - gi|39597170|emb|CAE59397.1| Hypothetical protein CBG02760 [Caenorhabditis briggsae], gi|187037152|em...
gi|157751562 - gi|157751562|ref|XP_001679493.1| Hypothetical protein CBG02760 [Caenorhabditis briggsae AF16]
228.0 [0..1] [301..1]

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Predicted Domain #1
Region A:
Residues: [1-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLLNLTIS TFLISFVTSK FTPDFSQWLA DYYGPQVRDQ IERLDLGPGG SFGGKKNRND  60
   61 TLKNQPLIIV HGVSDTAGEK PFWAAQWFRK EGKYAENEIY STTYFNGAQG NPLKWIEYSM 120
  121 KCEYIKQVRS LIVAVRLYTG RNVDVIGFSL GVPVSRKAIL GGRCVDTGEY LGEPLTRVVD 180
  181 TYIGVAGPNR GASPQLGPLS VPACALSITP ICNSVNGLYS GNCPAQSEFL QDINKFAHYE 240
  241 GQYTYSIYTQ KDQMVGYTVC GQLTSPLPGQ NGQRVYTDKN HDQVFDDTHE VQLRMIRDHV 300
  301 VT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.39794
Match: 1a88A
Description: Chloroperoxidase L
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle