YRC Public Data Repository - Protein Structure Prediction

Protein:	CE17903
Organism:	Caenorhabditis elegans
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17903.

Description	E-value	Query Range	Subject Range
gi\|39961850, gi\|... - gi\|39961850\|ref\|XP_364723.1\| hypothetical protein MG09568.4 [Magnaporthe grisea 70-15], gb\|EAA53818....	218.0	[0..3]	[158..42]
gi\|28921166, gi\|... - gi\|32421457\|ref\|XP_331172.1\| hypothetical protein [Neurospora crassa], gi\|28921166\|gb\|EAA30480.1\| au... gi\|85093549 - gi\|85093549\|ref\|XP_959716.1\| augmenter of liver regeneration [Neurospora crassa OR74A]	218.0	[0..3]	[160..38]
gi\|39589274, gi\|... - gi\|39589274\|emb\|CAE74303.1\| Hypothetical protein CBG22010 [Caenorhabditis briggsae], gi\|187021918\|em... gi\|157744871 - gi\|157744871\|ref\|XP_001667532.1\| Hypothetical protein CBG22010 [Caenorhabditis briggsae AF16]	200.0	[0..1]	[161..1]
ALR_MOUSE - FAD-linked sulfhydryl oxidase ALR OS=Mus musculus GN=Gfer PE=1 SV=2	199.0	[0..1]	[160..57]
gi\|220947962 - gi\|220947962\|gb\|ACL86524.1\| CG12534-PA [synthetic construct] gi\|24643392, gi\|... - gi\|24643392\|ref\|NP_608353.1\| CG12534-PA [Drosophila melanogaster], gi\|22832612\|gb\|AAF49017.2\| CG1253...	198.0	[0..4]	[160..30]
GFER - growth factor, augmenter of liver regeneration	198.0	[0..8]	[160..69]
gi\|109127227 - gi\|109127227\|ref\|XP_001082639.1\| PREDICTED: similar to erv1-like growth factor isoform 2 [Macaca mul...	197.0	[0..8]	[160..69]
gi\|73959530 - gi\|73959530\|ref\|XP_537010.2\| PREDICTED: similar to erv1-like growth factor [Canis familiaris]	195.0	[0..8]	[160..174]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIGPDGKPC RACVSVEDMM KKGREMAEKI KKKESETTPS TSTGAKLHGC PVDKDELGRS  60
   61 TWNLLHTMSV YYPEKPTDED KDRARSFMSI LGKTYPCDFC AKDLRKDLKE SPPKVESREA 120
  121 FALWMCQLHN KVNEKTGKPK FECRDVMQRW RDGWKDGSCD Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	1oqcA
Description:	Augmenter of liver regeneration
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, oxygen as acceptor	8.87150227689427	bayes_pls_golite062009
thiol oxidase activity	8.35075284009652	bayes_pls_golite062009
flavin-linked sulfhydryl oxidase activity	3.45360739809667	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	2.80346464149611	bayes_pls_golite062009
binding	1.31466847278576	bayes_pls_golite062009
protein binding	0.425029114798138	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: