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View Structure Prediction Details

Protein: rog-1
Organism: Caenorhabditis elegans
Length: 195 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rog-1.

Description E-value Query
Range
Subject
Range
gi|157753752 - gi|157753752|ref|XP_001680588.1| Hypothetical protein CBG07177 [Caenorhabditis briggsae AF16]
gi|39587027, gi|... - gi|39587027|emb|CAE62962.1| Hypothetical protein CBG07177 [Caenorhabditis briggsae], gi|187033568|em...
232.0 [0..1] [176..1]
gi|12849167 - gi|12849167|dbj|BAB28233.1| unnamed protein product [Mus musculus]
203.0 [0..12] [174..109]
gi|157819193, gi... - gi|187469633|gb|AAI67027.1| Similar to Docking protein 5 (Downstream of tyrosine kinase 5) (Protein ...
203.0 [0..12] [174..112]
gi|114682713 - gi|114682713|ref|XP_001169643.1| PREDICTED: docking protein 5 isoform 3 [Pan troglodytes]
DOK5 - docking protein 5
201.0 [0..12] [182..112]
gi|109091551 - gi|109091551|ref|XP_001091477.1| PREDICTED: docking protein 5 isoform 1 [Macaca mulatta]
201.0 [0..12] [174..112]
gi|73992605 - gi|73992605|ref|XP_543060.2| PREDICTED: similar to Docking protein 5 (Downstream of tyrosine kinase ...
197.0 [0..12] [171..182]
gi|114682715 - gi|114682715|ref|XP_001169624.1| PREDICTED: docking protein 5 isoform 2 [Pan troglodytes]
196.0 [0..12] [182..112]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAIISVAKS ILGNRRGDDE SLYTGAGPAG SGASHSFRVY IHGNRKKNEL VHAWLRVTRT  60
   61 TITLEISKKE CLVWPLPLIR RYGYTSAGIF FFESGRRCES GEGMFTFQSK KADEIFQLIQ 120
  121 SLIEEFANTS MEKQNMENSF RYQRQQSVPI SSRRMSNTSN TSSVFGTADY KLQVSKLKNG 180
  181 SARLQTTNFD LADPN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.221849
Match: 1xr0B
Description: Structural Basis of SNT PTB Domain Interactions with Distinct Neurotrophic Receptors
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.5144141194236 bayes_pls_golite062009
protein binding 1.42613583294271 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle