YRC Public Data Repository - Protein Structure Prediction

Protein:	ces-1
Organism:	Caenorhabditis elegans
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ces-1.

Description	E-value	Query Range	Subject Range
gi\|73947291 - gi\|73947291\|ref\|XP_541354.2\| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...	389.0	[0..2]	[269..2530]
gi\|114626840 - gi\|114626840\|ref\|XP_528435.2\| PREDICTED: zinc finger protein 79 (pT7) [Pan troglodytes]	355.0	[0..4]	[269..400]
gi\|76644053 - gi\|76644053\|ref\|XP_592867.2\| PREDICTED: similar to zinc finger protein 287 [Bos taurus]	347.0	[0..3]	[269..760]
gi\|109001733 - gi\|109001733\|ref\|XP_001107866.1\| PREDICTED: similar to zinc finger protein 31 isoform 2 [Macaca mula...	338.0	[0..4]	[269..722]
gi\|2224593 - gi\|2224593\|dbj\|BAA20784.1\| KIAA0326 [Homo sapiens]	330.0	[0..3]	[269..247]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITTPNISLT PTVAPPVDFP IIGNCDFQAQ LWHLMSLHLQ MQKSSAASTS SSSSSSTSSE  60
   61 NLKKSPSSVQ NTSVFSIDNI LNSQKVPKLE LENDEDVSSS PSPTCSTTGY TLDSLQNLDR 120
  121 RSLNKKGPSS HNRCVCDKCG KSYATTSNLS RHKQTHRALD SPHAKQCPHC DRVYVSMPAL 180
  181 SM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.09691
Match:	2i13A
Description:	No description for 2i13A was found.

Predicted Domain #2

Region A:
Residues: [183-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HILTHNASHE CNVCGKRFSR LWLLQGHLRS HTGLRPFSCA HCGKSFADRS NLRAHMLTHT  60
   61 GDKRFECDKC GRRFALRAYL NRHLETCK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.30103
Match:	1ubdC
Description:	Ying-yang 1 (yy1, zinc finger domain)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits