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View Structure Prediction Details

Protein: CE17782
Organism: Caenorhabditis elegans
Length: 487 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17782.

Description E-value Query
Range
Subject
Range
gi|39592015, gi|... - gi|39592015|emb|CAE75235.1| Hypothetical protein CBG23186 [Caenorhabditis briggsae], gi|187021216|em...
gi|157762860 - gi|157762860|ref|XP_001673772.1| Hypothetical protein CBG23186 [Caenorhabditis briggsae AF16]
498.0 [0..10] [487..44]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHQNLKFPF YKARIRLFIL HTTIRVPSRN LGKNAIAMVT TMNKRTVSNI TNLKINLIGT  60
   61 NKTDKWMQQA TLTTEHGLHT RCDYSLVTAH ANLLEDMEKL EIESDGVLVE VPVKRPKYS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APKPVVFCIA PQFAAEQWQT FLVQLHVSKR YGAHLQLYVV SMVESYFNLL KEHEKLGLVS  60
   61 IEPWLTIKFS TTDEPYLEPN RNVELRNQAA AHTDCILMYK EAVSFIGVLD MDDILIPTNA 120
  121 NSYYEEFERE YAGSWEISAL HYDKFDYKTI KTSVLDSKKT LNISSMIKNS KRLKTKDEGK 180
  181 SFFRPERLNS TWSHYSLNSD DRPIYLTKKQ RKPIYRKMKY IYNNGIFHLK HMVFVNSSNV 240
  241 REGVIPINPG DNITELISER HLKEIDEDFL STISQPEFTS LTS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.09
Match: 1h7lA
Description: Spore coat polysaccharide biosynthesis protein SpsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 0.117862115002202 bayes_pls_golite062009
catalytic activity 0.075405962065044 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.00643109218840909 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [403-487]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLPKDDFYTN IVFQCYNQSF YHIRDAGLLS AESTCVNAFD CELSQREAMP CTHSDATYHS  60
   61 GPPMFPITFH WASDAFFSDE IGCYQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle