YRC Public Data Repository - Protein Structure Prediction

Protein:	sdhd-1
Organism:	Caenorhabditis elegans
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sdhd-1.

Description	E-value	Query Range	Subject Range
DHSD_CAEBR - Putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Caenorhab... gi\|157751202 - gi\|157751202\|ref\|XP_001679313.1\| Hypothetical protein CBG02978 [Caenorhabditis briggsae AF16]	184.0	[0..1]	[145..1]
gi\|39974375, gi\|... - gi\|39974375\|ref\|XP_368578.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA49008....	168.0	[0..1]	[144..25]
gi\|58257393 - gi\|58257393\|gb\|AAW69318.1\| succinate dehydrogenase membrane anchor subunit-like protein [Magnaporthe...	166.0	[0..1]	[144..25]
gi\|46107720, gi\|... - gi\|46107720\|ref\|XP_380919.1\| hypothetical protein FG00743.1 [Gibberella zeae PH-1], gi\|42547846\|gb\|E...	164.0	[0..5]	[144..39]
sdh4 - TIM22 inner membrane protein import complex anchor subunit Tim18 DHSD_SCHPO - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Schizosaccharomyce...	161.0	[0..11]	[144..50]
gi\|114192604, gi... - gi\|115397643\|ref\|XP_001214413.1\| succinate dehydrogenase cytochrome b small subunit, mitochondrial p...	159.0	[0..16]	[144..39]
gi\|159131680 - gi\|159131680\|gb\|EDP56793.1\| succinate dehydrogenase subunit CybS, putative [Aspergillus fumigatus A1... gi\|70996342, gi\|... - gi\|70996342\|ref\|XP_752926.1\| succinate dehydrogenase subunit CybS [Aspergillus fumigatus Af293], gi\|...	157.0	[0..4]	[144..27]
DHSD_NEUCR - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Neurospora crassa ... DHSD_NEUCR - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Neurospora crassa ...	156.0	[0..1]	[144..20]
gi\|169616888, gi... - gi\|169616888\|ref\|XP_001801859.1\| hypothetical protein SNOG_11620 [Phaeosphaeria nodorum SN15], gi\|11...	155.0	[0..7]	[143..54]
gi\|220958222, gi... - gi\|220958222\|gb\|ACL91654.1\| CG10219-PA [synthetic construct], gi\|220948802\|gb\|ACL86944.1\| CG10219-PA... CG10219-PA - This gene is referred to in FlyBase by the symbol Dmel\CG10219 (CG10219, FBgn0039112). It is a prote...	155.0	[0..1]	[145..33]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASLRHMAH FQKALLVARS APRISTIVRA TSTLNDGASK VPDHSMHFKL ERLWAVGMLP  60
   61 ILPASYFIHG PVMDAVLTVA LTLHIHWGIH GVVYDYARPY VIGEAAAKAA HVGVYLITGL 120
  121 LLGALLHFNT NDVGITKAFE LVFSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.39794
Match:	1zoyD
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits