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View Structure Prediction Details

Protein: CE17756
Organism: Caenorhabditis elegans
Length: 467 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17756.

Description E-value Query
Range
Subject
Range
gi|187036970, gi... - gi|39597351|emb|CAE59579.1| Hypothetical protein CBG02979 [Caenorhabditis briggsae], gi|187036970|em...
gi|157751200 - gi|157751200|ref|XP_001679312.1| Hypothetical protein CBG02979 [Caenorhabditis briggsae AF16]
450.0 [0..1] [465..1]

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Predicted Domain #1
Region A:
Residues: [1-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHSDEYKAK RLERKKRFMQ QAKKNNVFKA RRRNNFSKRP NFHNHQQENQ QEQQFQKQDS  60
   61 TALRQRGFFQ VLPTDDLPQV PQCSHGPCLL FEKKNGPEVE ETFFACAIYR NQAEFCDFKL 120
  121 TFNKETGEIE VKEAVEGEED AEKKKKKKKI FGYNRIPKAL TEMSPTDT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [169-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLYCKTCINV FPNKHECVCE PVEREALERP THLLPPVNEQ HGESQFFFST ETLDVITKAV  60
   61 EKSKVDGILC IGAPRIFENI RALHPEKNVF LLDYD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [264-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRFAKFFPSK QYAQYSMLVD HFFDKIAEPK LMEFFDKSKS ILMITDPPFG VFMEPLLKSI  60
   61 EKMKKRFVST GKEETLFYSM IVLPIYIRKY VLHGNFWMSD YRVTYEGHKL YQHSEKTIVR 120
  121 LFTDLPVECI DLKNVAGYKF CEVCDRYVTE RNVHCDRCQA CTSVEQGKWN HCEKCDKCVK 180
  181 PRYVHCAQCA RCHLYGRCIQ KHDE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle